Construct: ORF TRCN0000475877
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000510.1_s317c1
- Derived from:
- ccsbBroadEn_07849
- DNA Barcode:
- CAACATAGTTAAGCAATTATTCAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KANK1 (23189)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475877
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001256876.2 | 99.9% | 99.8% | (many diffs) |
| 2 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001256877.2 | 99.9% | 99.8% | (many diffs) |
| 3 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354334.1 | 99.9% | 99.8% | (many diffs) |
| 4 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_015158.4 | 99.9% | 99.8% | (many diffs) |
| 5 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447460.1 | 99.8% | 99.8% | (many diffs) |
| 6 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447461.1 | 99.8% | 99.8% | (many diffs) |
| 7 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447462.1 | 99.8% | 99.8% | (many diffs) |
| 8 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447463.1 | 99.8% | 99.8% | (many diffs) |
| 9 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447464.1 | 99.8% | 99.8% | (many diffs) |
| 10 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447465.1 | 99.8% | 99.8% | (many diffs) |
| 11 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447466.1 | 99.8% | 99.8% | (many diffs) |
| 12 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447467.1 | 99.8% | 99.8% | (many diffs) |
| 13 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447468.1 | 99.8% | 99.8% | (many diffs) |
| 14 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354332.1 | 98.5% | 98.5% | (many diffs) |
| 15 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_017014517.2 | 98.5% | 98.5% | (many diffs) |
| 16 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354331.1 | 93.9% | 93.9% | (many diffs) |
| 17 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_017014522.2 | 93.9% | 93.9% | (many diffs) |
| 18 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447469.1 | 93.9% | 93.9% | (many diffs) |
| 19 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_017014525.2 | 92.6% | 92.6% | (many diffs) |
| 20 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354333.1 | 88.2% | 88.1% | (many diffs) |
| 21 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354335.1 | 88.2% | 88.1% | (many diffs) |
| 22 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354337.1 | 88.2% | 88.1% | (many diffs) |
| 23 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354341.1 | 88.2% | 88.1% | (many diffs) |
| 24 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_153186.5 | 88.2% | 88.1% | (many diffs) |
| 25 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447470.1 | 88.1% | 88.1% | (many diffs) |
| 26 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354338.1 | 86.8% | 86.8% | (many diffs) |
| 27 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354340.1 | 86.8% | 86.8% | (many diffs) |
| 28 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354344.1 | 86.8% | 86.8% | (many diffs) |
| 29 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XM_024447471.1 | 86.8% | 86.8% | (many diffs) |
| 30 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354339.1 | 82.2% | 82.2% | (many diffs) |
| 31 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354342.1 | 82.2% | 82.2% | (many diffs) |
| 32 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354343.1 | 82.2% | 82.2% | (many diffs) |
| 33 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NM_001354336.1 | 80.9% | 80.9% | (many diffs) |
| 34 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | NR_148869.1 | 69.9% | (many diffs) | |
| 35 | human | 23189 | KANK1 | KN motif and ankyrin repeat... | XR_002956771.1 | 67.9% | (many diffs) | |
| 36 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | NM_181404.6 | 84% | 84.3% | (many diffs) |
| 37 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | XM_006526585.3 | 84% | 84.3% | (many diffs) |
| 38 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | XM_011247113.2 | 84% | 84.3% | (many diffs) |
| 39 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | XM_006526584.3 | 82.3% | 82.2% | (many diffs) |
| 40 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | XM_006526587.3 | 74.4% | 75.2% | (many diffs) |
| 41 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | XM_006526588.3 | 74.4% | 75.2% | (many diffs) |
| 42 | mouse | 107351 | Kank1 | KN motif and ankyrin repeat... | XM_006526589.3 | 74.4% | 75.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 4122
- ORF length:
- 4056
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc tcacaccaca aaggttaacg gcagtgcctc aggaaaagca ggtgatattc 121 tcagtggaga ccaggacaag gaacagaaag acccttactt tgtggagacc ccctatggtt 181 atcaactaga cttagatttc ctcaaatatg tggatgacat acagaaggga aataccatca 241 aaagactgaa catccagaag aggcggaagc cgtccgtgcc atgcccagaa cccaggacca 301 catctggtca gcaaggtata tggacttcca ctgaatccct ctcatcctcc aacagtgatg 361 acaacaagca gtgccccaac ttcctcatag ccagaagtca agttacatca actccaatct 421 caaagccacc tccccctctg gagacctcac tcccttttct taccatccca gaaaatcgac 481 agctgccacc tccctcacca caactcccaa agcataacct tcatgtcacc aagacactga 541 tggagacccg gagaagactg gaacaggaga gagccaccat gcagatgaca ccgggtgagt 601 tcagaaggcc caggctggcc agttttggag gcatgggcac cacaagctcc ctcccttctt 661 ttgtgggttc tggaaaccac aagcctgcca agcaccagct tcagaatgga taccaaggta 721 atggggatta tggtagctat gccccagctg ctcccaccac ttcctccatg gggagctcca 781 tccgccacag ccccctgagc tcagggatct ccaccccagt gaccaacgtg agccccatgc 841 acctgcagca catccgcgag cagatggcca ttgctctgaa acgcctgaag gagctggagg 901 agcaggtgcg aaccatccct gtgctccagg taaagatctc tgtcttgcaa gaagagaaaa 961 ggcagttggt ctcacagctg aaaaaccaaa gggctgcatc ccagatcaat gtctgtggtg 1021 tgaggaagcg gtcctatagt gcggggaacg cctcccagct ggaacagctc tcccgggccc 1081 gaagaagtgg cggggaatta tacattgact atgaggagga agaaatggag accgtagaac 1141 agagcacgca gaggataaag gagttccggc aacttacagc agacatgcaa gccctggagc 1201 agaagatcca ggacagcagc tgtgaggcct cctcagagct cagggagaat ggagagtgcc 1261 ggtctgtggc tgtgggtgcc gaggagaaca tgaacgacat cgtcgtgtac cacagaggct 1321 ccaggtcctg taaggatgca gctgtaggga cacttgttca gatgagaaat tgtggggtca 1381 gcgtgacaga ggccatgctt ggagtgatga ctgaagctga caaagaaatt gagctgcaac 1441 agcagaccat agaatccttg aaggaaaaga tctatcgcct agaagtacag cttagagaaa 1501 ccacccatga ccgggagatg actaaactga aacaagagct gcaggctgct ggatcgagga 1561 aaaaggttga caaagccacg atggcccagc cgcttgtttt cagtaaggtg gtggaggcag 1621 tggtgcagac cagagaccaa atggtcggca gtcacatgga cctggtggac acgtgtgttg 1681 ggacctccgt ggaaacaaac agtgtaggca tctcctgcca gcctgaatgt aagaataaag 1741 tcgtagggcc tgagctgcct atgaattggt ggattgttaa ggagagggtg gaaatgcatg 1801 accgatgtgc tgggaggtct gtggaaatgt gtgacaagag tgtgagtgtg gaagtcagcg 1861 tctgcgaaac aggcagcaac acagaggagt ctgtgaatga cctcacactc ctcaagacaa 1921 acttgaatct caaagaagtg cggtctatcg gttgtggaga ttgttctgtt gacgtgaccg 1981 tctgctctcc aaaggagtgc gcctcccggg gcgtgaacac tgaggctgtt agccaggtgg 2041 aagctgccgt catggcagtg cctcgtactg cagaccagga cactagcaca gatttggaac 2101 aggtgcacca gttcaccaac accgagacgg ccaccctcat agagtcctgc accaacactt 2161 gtctaagcac tttggacaag cagaccagca cccagactgt ggagacgcgg acagtagctg 2221 taggagaagg ccgtgtcaag gacatcaact cctccaccaa gacgcggtcc attggtgttg 2281 gaacgttgct ttctggccat tctgggtttg acaggccatc agctgtgaag accaaagagt 2341 caggtgtggg gcagataaat attaacgaca actatctggt tggtctcaaa atgaggacta 2401 tagcttgtgg gccaccacag ttgactgtgg ggctgacagc cagcagaagg agcgtggggg 2461 ttggggatga ccctgtaggg gaatctctgg agaaccccca gcctcaagct ccacttggaa 2521 tgatgactgg cctggatcac tacattgagc gtatccagaa gctgctggca gaacagcaga 2581 cactgctggc tgagaactac agtgaactgg cagaagcttt cggggaacct cactcacaga 2641 tgggctccct caactctcag ctcatcagca ccctgtcgtc tatcaactct gtcatgaaat 2701 ctgcaagcac tgaagagctg aggaaccctg acttccagaa aaccagtctg ggtaaaatca 2761 caggcaatta tttgggatat acctgtaagt gtgggggcct tcagtcagga agtcccttaa 2821 gctcccagac atcccagcct gagcaagaag tggggacctc agaaggaaag ccaatcagca 2881 gcctggatgc cttccccact caggaaggta cgctgtctcc agtgaacctg acagacgacc 2941 agatcgccgc tggcctctat gcatgtacaa acaatgaaag tacactgaag tccatcatga 3001 agaagaaaga tggtaacaaa gattcaaatg gcgcaaaaaa gaatcttcag tttgttggca 3061 ttaatggagg gtatgaaaca acttcaagtg atgattccag ctcagatgaa agctcttctt 3121 ccgagtcaga tgacgagtgt gatgtcattg agtatcctct tgaagaagag gaggaggagg 3181 aggatgaaga cactcgggga atggcagaag ggcaccatgc agttaatatt gaaggtttga 3241 agtctgccag ggtggaagat gaaatgcagg ttcaagaatg tgaacctgag aaggtggaaa 3301 tcagagagag gtatgaatta agtgaaaaga tgttgtctgc atgcaactta ctgaaaaata 3361 ctataaatga ccccaaagct ttgaccagca aagatatgag gttctgtctg aacaccctcc 3421 agcacgagtg gttccgcgtg tccagtcaga agtcagccat tccagccatg gtgggggact 3481 acatagctgc ttttgaggcc atttccccag atgtcctccg ctatgtcatc aacttggcag 3541 acggcaacgg caacacagcc ctccattaca gcgtgtccca ctccaacttc gagattgtga 3601 agctgctgtt agatgccgat gtgtgtaatg tggatcacca gaacaaggca ggctacaccc 3661 ccatcatgtt ggcggccctc gccgctgtgg aagcagagaa ggacatgcgg attgtggaag 3721 aactctttgg ctgtggggat gtgaatgcca aagctagtca ggcgggacag acggcccTCA 3781 TGCTGGCGGT CAGTCACGGA CGGATAGACA TGGTGAAGGG CCTTCTGGCC TGTGGGGCTG 3841 ATGTCAACAT CCAGGATGAC GAGGGCTCCA CGGCCCTCAT GTGTGCCAGC GAGCACGGGC 3901 ACGTGGAGAT TGTCAAGCTG CTGCTGGCCC AGCCCGGCTG CAACGGTCAC CTAGAGGACA 3961 ACGATGGCAG CACTGCGCTC TCAATCGCCC TGGAAGCAGG ACACAAGGAC ATCGCTGTTC 4021 TTCTGTATGC CCATGTCAAC TTTGCAAAAG CCCAGTCTCC GGGCACCCCT AGGCTTGGAA 4081 GGAAGACGTC TCCTGGCCCC ACCCACCGAG GTTCATTTGA TTGCCCAACT TTCTTGTACA 4141 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 4201 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 4261 AGGACGACAA CATAGTTAAG CAATTATTCA AACGCGTTAA GTCgacaatc aacctctgga 4321 ttacaaaatt tgtgaaagat t