Construct: ORF TRCN0000476036

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009938.1_s317c1
Derived from:
ccsbBroadEn_15035
DNA Barcode:
CTGATCTAGGTATCATCTTGCTCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNNM1 (26507)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476036
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26507 CNNM1 cyclin and CBS domain dival... NM_001345888.1 59.4% 59.4% 1_1095del;1284T>G
2 human 26507 CNNM1 cyclin and CBS domain dival... NM_001345889.1 58% 58.1% 1_1095del;1284T>G;2177_2239del
3 human 26507 CNNM1 cyclin and CBS domain dival... NM_020348.3 56.3% 56.2% 1_1095del;1284T>G;2525_2674del
4 human 26507 CNNM1 cyclin and CBS domain dival... NM_001345887.1 55.1% 55% (many diffs)
5 human 26507 CNNM1 cyclin and CBS domain dival... XM_011539631.3 51.8% 51.7% (many diffs)
6 human 26507 CNNM1 cyclin and CBS domain dival... XR_945667.2 49.3% (many diffs)
7 human 26507 CNNM1 cyclin and CBS domain dival... NR_144311.1 26.9% (many diffs)
8 human 26507 CNNM1 cyclin and CBS domain dival... XR_002956974.1 26.7% (many diffs)
9 mouse 83674 Cnnm1 cyclin M1 NM_031396.2 50.4% 53.8% (many diffs)
10 mouse 83674 Cnnm1 cyclin M1 XM_006527482.3 49.9% 53.2% (many diffs)
11 mouse 83674 Cnnm1 cyclin M1 XM_006527481.3 49.3% 52.6% (many diffs)
12 mouse 83674 Cnnm1 cyclin M1 XM_006527480.3 48.8% 52.1% (many diffs)
13 mouse 83674 Cnnm1 cyclin M1 XR_001782623.1 42.9% (many diffs)
14 mouse 83674 Cnnm1 cyclin M1 XM_006527483.3 37.8% 40.2% (many diffs)
15 mouse 83674 Cnnm1 cyclin M1 XM_006527485.3 36.4% 39.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1677
ORF length:
1608
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcagccgcc ttccccgtgt gctacccgct gggccgcctg ctggactggg
121cgctgcgcca ggagataagc accttctaca cgcgggagaa gttgctggag acgttgcggg
181ccgcagaccc ctacagtgac ctggtgaagg aggagctcaa catcatacag ggtgccctgg
241agctgcgcac caaagtggtg gaggaggtgc tgacccccct gggagactgc ttcatgctgc
301gctcagacgc ggtgctcgac ttcgccactg tctccgagat cctgcgcagc ggctacactc
361gcatcccagt gtacgagggt gaccagcggc acaacattgt ggacatttta tttgtcaagg
421acttggcctt cgtggacccc gacgactgca ccccgctcct cactgtcacc cgcttctaca
481accggcccct gcattgtgtt ttcaatgaca cccgactgga cacggttctg gaggagttta
541agaagggaaa atctcacctg gccattgtcc agcgggtgaa taatgaggga gaaggggacc
601ctttctatga ggtgatgggc attgtcacgc tggaggatat catagaggag attatcaagt
661cggagatcct ggatgaaact gatctctaca ctgacaatcg gaaaaagcag agggtcccgc
721aacgggagcg gaagcggcat gacttctcct tgtttaagct ttcggacacg gagatgcggg
781tgaagatctc accacagctt ctgctagcca cacaccgctt catggccaca gaagtggagc
841cctttaagtc tctgtacctt tcggagaaga tcctgctccg gctcctgaaa catcccaacg
901tgatccagga gctgaagttt gatgagaaga acaagaaggc cccggaacac tacctctacc
961agcgcaaccg ccctgtggac tactttgtgc tgcttctaca gggtaaagtg gaggtggagg
1021ttggtaagga aggccttcgc tttgaaaatg gagcctttac ttactatggc gtcccagcca
1081tcatgaccac tgcttgctca gataatgacg tgcggaaggt tggaagtctg gctggatctt
1141ctgtctttct aaaccggtcc ccttctcgct gcagtgggtt gaatcgctct gagtctccaa
1201accgagagcg cagtgacttt gggggcagca acacccagct gtacagcagc agcaacaacc
1261tctacatgcc tgactactca gtccacatcc tcagcgatgt gcagtttgtg aagatcacac
1321ggcagcaata tcagaacgca ctcactgcct gccacatgga cagctcaccT CAGTCCCCTG
1381ACATGGAGGC CTTCACAGAC GGGGACTCCA CTAAGGCCCC CACAACCCGG GGCACACCCC
1441AGACCCCTAA GGATGACCCC GCCATCACGC TCCTCAACAA CAGGAACAGC CTGCCGTCAT
1501CAGATAGTGA ATGTTGTAAC ATCAACCTGG ATACAGAGAC CAGCCCCTGC AGTAGCGATT
1561TTGAGGAAAA CGTGGGCAAG AAGCTGCTGA GAACCTTGAG TGGCCAAAAA AGGAAGAGGT
1621CACCAGAAGG AGAGAGAACC TCTGAGGACA ACTCCAATTT AACACCTCTG ATCACATTGC
1681CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1741TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1801ATATATCTTG TGGAAAGGAC GACTGATCTA GGTATCATCT TGCTCAACGC GTTAAGTCga
1861caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)