Construct: ORF TRCN0000476109

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017475.1_s317c1
Derived from:
ccsbBroadEn_04781
DNA Barcode:
GCTGGTTGAAGATTCTCGGGCAGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDYL2 (124359)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476109
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 124359 CDYL2 chromodomain Y like 2 NM_152342.4 100% 100%
2 human 124359 CDYL2 chromodomain Y like 2 XM_011522867.2 98.9% 98% (many diffs)
3 human 124359 CDYL2 chromodomain Y like 2 XM_011522866.1 92.1% 92.4% (many diffs)
4 human 124359 CDYL2 chromodomain Y like 2 XM_024450151.1 88.3% 88.3% 0_1ins177
5 mouse 75796 Cdyl2 chromodomain protein, Y chr... NM_029441.3 85.3% 91.5% (many diffs)
6 mouse 75796 Cdyl2 chromodomain protein, Y chr... XM_017312996.1 62.2% 67.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1584
ORF length:
1518
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ttctggggac ctttacgagg ttgaaaggat tgtagacaag aggaagaaca
121agaaaggaaa atgggagtat cttatccgat ggaaaggcta cgggagcacc gaggacacgt
181gggagccgga gcaccacctc ttgcactgtg aggagtttat tgatgaattc aatgggttgc
241acatgtccaa ggacaagagg atcaagtcag ggaagcagtc cagtacctcc aagctgctgc
301gtgacagtcg aggcccgtcg gttgagaaac tgtcccacag accttcagat cctggaaaga
361gcaaggggac ctcccataaa cggaagcgaa ttaaccctcc cctggccaag ccaaaaaaag
421ggtattcagg caagccctct tcaggaggtg acagggccac caagacggtg tcttacagga
481ctacccccag tggtttgcaa ataatgcccc tgaaaaagtc tcagaacggg atggaaaatg
541gggacgccgg ctctgagaag gatgagaggc actttggaaa tgggtcccat cagcctggct
601tggatttgaa tgatcatgtt ggagagcaag atatgggtga atgtgacgtg aatcacgcta
661cactggcgga gaacgggctc ggctctgctc tgaccaacgg gggattgaac ctgcacagtc
721cagtgaagag gaagctggaa gcggagaagg actacgtctt tgacaaaagg ctcagataca
781gtgtccgcca gaatgaaagc aactgtcggt ttcgagacat cgttgtgcgg aaggaagaag
841ggttcacgca catcctgctg tccagtcaga cctcggataa caatgccctg acacctgaga
901tcatgaaaga agtccggcga gcgctctgca acgcagccac agacgacagc aaactgctgc
961tcctcagcgc agtggggagc gtgttctgca gcggcctgga ttattcctac ctaattggcc
1021ggttgtccag cgaccggcga aaggagagca ctcggattgc agaagccatc agggactttg
1081tgaaggcctt tatccagttt aagaagccta tcgtggtggc catcaatggg ccggccctgg
1141gcctgggtgc ctccatcctg cccctctgtg acatcgtgtg ggccagtgag aaggcctggt
1201tccagacgcc ctacgccacc atccgcctca cgcctgctgg ctgctccTCC TACACCTTCC
1261CCCAGATCCT GGGCGTCGCG CTGGCCAATG AGATGCTGTT CTGTGGGCGG AAGCTCACCG
1321CCCAGGAGGC CTGCAGCAGG GGGCTGGTGT CGCAGGTCTT CTGGCCCACC ACGTTCAGCC
1381AGGAGGTCAT GCTGCGGGTC AAGGAGATGG CATCCTGCAG TGCCGTGGTG TTAGAGGAGT
1441CCAAATGCCT CGTGCGGAGC TTCCTGAAAT CAGTGCTGGA AGACGTGAAC GAGAAGGAAT
1501GCCTCATGCT CAAGCAGCTC TGGAGCTCCT CCAAAGGCCT TGACTCCCTT TTCAGCTACC
1561TGCAGGACAA AATTTATGAA GTCTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1621AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1681TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG CTGGTTGAAG
1741ATTCTCGGGC AGTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1801att

Download FASTA (ORF) (Full)