Construct: ORF ccsbBroadEn_04781
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017475.1_s300c1, BRDN0000390582
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDYL2 (124359)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124359 | CDYL2 | chromodomain Y like 2 | NM_152342.4 | 100% | 100% | |
| 2 | human | 124359 | CDYL2 | chromodomain Y like 2 | XM_011522867.2 | 98.9% | 98% | (many diffs) |
| 3 | human | 124359 | CDYL2 | chromodomain Y like 2 | XM_011522866.1 | 92.1% | 92.4% | (many diffs) |
| 4 | human | 124359 | CDYL2 | chromodomain Y like 2 | XM_024450151.1 | 88.3% | 88.3% | 0_1ins177 |
| 5 | mouse | 75796 | Cdyl2 | chromodomain protein, Y chr... | NM_029441.3 | 85.3% | 91.5% | (many diffs) |
| 6 | mouse | 75796 | Cdyl2 | chromodomain protein, Y chr... | XM_017312996.1 | 62.2% | 67.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1584
- ORF length:
- 1518
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TTCTGGGGAC CTTTACGAGG TTGAAAGGAT TGTAGACAAG AGGAAGAACA 121 AGAAAGGAAA ATGGGAGTAT CTTATCCGAT GGAAAGGCTA CGGGAGCACC GAGGACACGT 181 GGGAGCCGGA GCACCACCTC TTGCACTGTG AGGAGTTTAT TGATGAATTC AATGGGTTGC 241 ACATGTCCAA GGACAAGAGG ATCAAGTCAG GGAAGCAGTC CAGTACCTCC AAGCTGCTGC 301 GTGACAGTCG AGGCCCGTCG GTTGAGAAAC TGTCCCACAG ACCTTCAGAT CCTGGAAAGA 361 GCAAGGGGAC CTCCCATAAA CGGAAGCGAA TTAACCCTCC CCTGGCCAAG CCAAAAAAAG 421 GGTATTCAGG CAAGCCCTCT TCAGGAGGTG ACAGGGCCAC CAAGACGGTG TCTTACAGGA 481 CTACCCCCAG TGGTTTGCAA ATAATGCCCC TGAAAAAGTC TCAGAACGGG ATGGAAAATG 541 GGGACGCCGG CTCTGAGAAG GATGAGAGGC ACTTTGGAAA TGGGTCCCAT CAGCCTGGCT 601 TGGATTTGAA TGATCATGTT GGAGAGCAAG ATATGGGTGA ATGTGACGTG AATCACGCTA 661 CACTGGCGGA GAACGGGCTC GGCTCTGCTC TGACCAACGG GGGATTGAAC CTGCACAGTC 721 CAGTGAAGAG GAAGCTGGAA GCGGAGAAGG ACTACGTCTT TGACAAAAGG CTCAGATACA 781 GTGTCCGCCA GAATGAAAGC AACTGTCGGT TTCGAGACAT CGTTGTGCGG AAGGAAGAAG 841 GGTTCACGCA CATCCTGCTG TCCAGTCAGA CCTCGGATAA CAATGCCCTG ACACCTGAGA 901 TCATGAAAGA AGTCCGGCGA GCGCTCTGCA ACGCAGCCAC AGACGACAGC AAACTGCTGC 961 TCCTCAGCGC AGTGGGGAGC GTGTTCTGCA GCGGCCTGGA TTATTCCTAC CTAATTGGCC 1021 GGTTGTCCAG CGACCGGCGA AAGGAGAGCA CTCGGATTGC AGAAGCCATC AGGGACTTTG 1081 TGAAGGCCTT TATCCAGTTT AAGAAGCCTA TCGTGGTGGC CATCAATGGG CCGGCCCTGG 1141 GCCTGGGTGC CTCCATCCTG CCCCTCTGTG ACATCGTGTG GGCCAGTGAG AAGGCCTGGT 1201 TCCAGACGCC CTACGCCACC ATCCGCCTCA CGCCTGCTGG CTGCTCCTCC TACACCTTCC 1261 CCCAGATCCT GGGCGTCGCG CTGGCCAATG AGATGCTGTT CTGTGGGCGG AAGCTCACCG 1321 CCCAGGAGGC CTGCAGCAGG GGGCTGGTGT CGCAGGTCTT CTGGCCCACC ACGTTCAGCC 1381 AGGAGGTCAT GCTGCGGGTC AAGGAGATGG CATCCTGCAG TGCCGTGGTG TTAGAGGAGT 1441 CCAAATGCCT CGTGCGGAGC TTCCTGAAAT CAGTGCTGGA AGACGTGAAC GAGAAGGAAT 1501 GCCTCATGCT CAAGCAGCTC TGGAGCTCCT CCAAAGGCCT TGACTCCCTT TTCAGCTACC 1561 TGCAGGACAA AATTTATGAA GTCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1621 agcattgctt atcaatttgt tgcaacgaac