Construct: ORF TRCN0000476314

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009783.1_s317c1
Derived from:
ccsbBroadEn_07562
DNA Barcode:
GAACCTTCATTTATCTTCGGGCAG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARFRP1 (10139)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000476314
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001267547.3 100% 100%
2 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001267548.2 100% 100%
3 human 10139 ARFRP1 ADP ribosylation factor rel... NM_003224.6 100% 100%
4 human 10139 ARFRP1 ADP ribosylation factor rel... XM_011528482.3 100% 100%
5 human 10139 ARFRP1 ADP ribosylation factor rel... XM_011528483.1 100% 100%
6 human 10139 ARFRP1 ADP ribosylation factor rel... XM_017027576.1 100% 100%
7 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001134758.4 85.9% 86% 519_519delGins85
8 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001267549.3 85.9% 86% 519_519delGins85
9 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001267546.3 76.6% 76.6% 0_1ins141
10 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001267544.3 71.6% 56.5% 345_346insGA;432_433ins169
11 human 10139 ARFRP1 ADP ribosylation factor rel... NM_001267545.2 60.1% 57.2% 345_346ins71;363_364ins169
12 human 10139 ARFRP1 ADP ribosylation factor rel... XR_001754110.1 33% 1_215del;560_561insGAGAA;814_1803del
13 human 10139 ARFRP1 ADP ribosylation factor rel... NR_051954.3 23.9% 1_111del;456_457insGA;713_2511del
14 human 10139 ARFRP1 ADP ribosylation factor rel... NR_051955.3 23.8% 1_116del;461_462insGA;718_2516del
15 human 10139 ARFRP1 ADP ribosylation factor rel... NR_051957.3 23.7% 1_111del;456_457insGAGAA;710_2508del
16 human 10139 ARFRP1 ADP ribosylation factor rel... NR_051956.3 23.7% 1_116del;461_462insGAGAA;715_2513del
17 human 10139 ARFRP1 ADP ribosylation factor rel... NR_051958.3 21.1% 1_111del;456_457ins71;644_2442del
18 mouse 76688 Arfrp1 ADP-ribosylation factor rel... NM_001165991.1 88.5% 97% (many diffs)
19 mouse 76688 Arfrp1 ADP-ribosylation factor rel... NM_001165992.1 88.5% 97% (many diffs)
20 mouse 76688 Arfrp1 ADP-ribosylation factor rel... NM_029702.4 88.5% 97% (many diffs)
21 mouse 76688 Arfrp1 ADP-ribosylation factor rel... XM_011239965.2 88.5% 97% (many diffs)
22 mouse 76688 Arfrp1 ADP-ribosylation factor rel... NM_001165995.1 66.8% 73.6% (many diffs)
23 mouse 76688 Arfrp1 ADP-ribosylation factor rel... XR_867137.2 29.6% (many diffs)
24 mouse 76688 Arfrp1 ADP-ribosylation factor rel... XR_867138.2 26.7% (many diffs)
25 mouse 76688 Arfrp1 ADP-ribosylation factor rel... NR_028585.1 18.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
672
ORF length:
603
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtacacgctg ctgtcgggct tgtacaagta catgtttcag aaggacgagt
121actgcatcct gatcctgggc ctggacaatg ctgggaagac gaccttcctg gagcagtcga
181aaacccgatt taacaagaac tacaagggga tgagtctatc caaaatcacc accaccgtgg
241gcctaaacat cggcactgtg gatgtgggaa aggctcggct catgttctgg gacttaggag
301ggcaggaaga gctgcagtct ttgtgggaca agtattatgc ggagtgtcac ggcgtcatct
361acgtcattga ctccaccgac gaggagaggc tGGCTGAGTC CAAGCAGGCG TTTGAGAAGG
421TGGTGACCAG CGAGGCGCTG TGCGGTGTCC CCGTCTTGGT GCTGGCCAAC AAGCAGGATG
481TGGAGACGTG CCTCTCAATC CCTGACATCA AGACGGCCTT CAGCGACTGC ACCAGCAAGA
541TCGGCAGGCG AGATTGCCTG ACCCAGGCCT GCTCGGCCCT CACAGGCAAA GGGGTGCGCG
601AGGGCATCGA GTGGATGGTG AAGTGTGTCG TGCGGAATGT GCACCGGCCG CCGCGGCAGA
661GGGACATCAC GTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT
721AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT
781TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA ACCTTCATTT ATCTTCGGGC
841AGACGCGTTA AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)

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