Construct: ORF TRCN0000476958
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017732.1_s317c1
- Derived from:
- ccsbBroadEn_14502
- DNA Barcode:
- AGGCAGAAGCTAACATTTTCTCGG
- Epitope Tag:
- V5 (not translated due to frame shift)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MGC70870 (403340)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476958
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539357.2 | 31.2% | 27.5% | (many diffs) |
| 2 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539358.2 | 31.2% | 27.5% | (many diffs) |
| 3 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_024447831.1 | 31.2% | 27.5% | (many diffs) |
| 4 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001083914.3 | 29.5% | 26% | (many diffs) |
| 5 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001290214.3 | 29.5% | 26% | (many diffs) |
| 6 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001290215.3 | 29.5% | 26% | (many diffs) |
| 7 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321012.2 | 29.5% | 26% | (many diffs) |
| 8 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321013.2 | 29.5% | 26% | (many diffs) |
| 9 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001321014.2 | 29.5% | 26% | (many diffs) |
| 10 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001329.4 | 29.5% | 26% | (many diffs) |
| 11 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269561.3 | 29.5% | 26% | (many diffs) |
| 12 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269564.3 | 29.5% | 26% | (many diffs) |
| 13 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269567.3 | 29.5% | 26% | (many diffs) |
| 14 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269568.5 | 29.5% | 26% | (many diffs) |
| 15 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269569.3 | 29.5% | 26% | (many diffs) |
| 16 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269571.3 | 29.5% | 26% | (many diffs) |
| 17 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_005269572.4 | 29.5% | 26% | (many diffs) |
| 18 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_006717642.3 | 29.5% | 26% | (many diffs) |
| 19 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539351.2 | 29.5% | 26% | (many diffs) |
| 20 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539353.2 | 29.5% | 26% | (many diffs) |
| 21 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539354.2 | 29.5% | 26% | (many diffs) |
| 22 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_011539355.2 | 29.5% | 26% | (many diffs) |
| 23 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_017015756.2 | 29.5% | 26% | (many diffs) |
| 24 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_017015757.2 | 29.5% | 26% | (many diffs) |
| 25 | human | 1488 | CTBP2 | C-terminal binding protein 2 | XM_024447830.1 | 29.5% | 26% | (many diffs) |
| 26 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_001363508.2 | 25.6% | 22.5% | (many diffs) |
| 27 | human | 403340 | MGC70870 | C-terminal binding protein ... | NR_003682.1 | 13.9% | (many diffs) | |
| 28 | human | 1488 | CTBP2 | C-terminal binding protein 2 | NM_022802.3 | 13.3% | 11.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 516
- ORF length:
- 447
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcaggagatc cacgagaaAG TTCTAAACGA AGTCGTGGGC GCCATGATGT 121 ACCACAACTT CTCCCTCACC AGGGAGGACC TGGAAAATTT CAAGGCCCTG AGAGTGATCA 181 TGCAGGTGGG CAGTGGCTAC GACAACGTGG CCATCAAGGC TGCTGGCGAG CTCGAAATTG 241 CTCTGTGCAG CATCCCGTCC GCAGCCGTGG AAGAGACAGC CGACTCCACC ACCGGCCACA 301 TCCTCAATCT GTACTGGGGG AACAGGTCAC TGTACCAGGC ACTGAGGGAA GGCACACGAG 361 TTCACAGCGT GGAGCAGATT GGCGAGGTGG CCTCAGTAAA GGCCCGCATT CGTGGGGAGA 421 TATTGGGCCT CATCGGCTTC GGTCGCACGC AGCAGGAGGT TGCAGTTAGA GCCAAGGCCT 481 TTGCAGGATG GGATCGAGCG GTCCCTGGTG TGCATTGCCA ACTTTCTTGT ACAAAGTGGT 541 TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC 601 TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA 661 AGGCAGAAGC TAACATTTTC TCGGACGCGT TAAGTCgaca atcaacctct ggattacaaa 721 atttgtgaaa gatt