Construct: ORF TRCN0000477061
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002074.1_s317c1
- Derived from:
- ccsbBroadEn_15319
- DNA Barcode:
- TTCACCCTGAAACTCTCCTACTGA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CLEC17A (388512)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477061
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388512 | CLEC17A | C-type lectin domain contai... | NM_001204118.1 | 99.9% | 17.3% | 195_196insC |
| 2 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026785.2 | 81.9% | 10.3% | 0_1ins205 |
| 3 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026786.2 | 81.9% | 10.3% | 0_1ins205 |
| 4 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026787.2 | 81.9% | 10.3% | 0_1ins205 |
| 5 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026788.2 | 81.9% | 10.3% | 0_1ins205 |
| 6 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026789.2 | 81.9% | 10.3% | 0_1ins205 |
| 7 | human | 388512 | CLEC17A | C-type lectin domain contai... | NM_207390.3 | 80.8% | 21.3% | 195_196insC;894_895ins110;918_919ins106 |
| 8 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026790.2 | 77.4% | 9.3% | 0_1ins205;103_104ins51 |
| 9 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026791.2 | 64.2% | 12.9% | 0_1ins205;241_242ins201 |
| 10 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026792.1 | 62.9% | 13.2% | 0_1ins205;690_691ins110;714_715ins106 |
| 11 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026793.1 | 52% | 15.6% | 0_1ins205;538_539ins152;591_592ins187 |
| 12 | human | 388512 | CLEC17A | C-type lectin domain contai... | NR_109784.1 | 50.9% | (many diffs) | |
| 13 | human | 388512 | CLEC17A | C-type lectin domain contai... | NR_109785.1 | 45.3% | (many diffs) | |
| 14 | human | 388512 | CLEC17A | C-type lectin domain contai... | XM_017026794.1 | 40.7% | 18.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 294
- ORF length:
- 225
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcataatctg tattccatca ctgggtaccc ggacccacca gggaccatgg 121 aggaggagga ggaggatgat gactatgaga actcaacacc tccctacaag gaccttcctc 181 ccaagccagg gaccatggag gaggaggagg aggatgatga ctatgagaac tcaacacctc 241 cctacaagga ccttcctccc aagcccaggg accatggagg aggaggagga ggatgatgac 301 tatgagaact caacacctcc ctacaaggac cttcctccca agccaggttc aagtgctcca 361 ccaagacctc caagggcagc aaaggaaaca gagaaacccc cacttccttg caagccccgg 421 aacatgacag gcctggacct cgccgctgtc acctgtccac ctcctcaact ggctgtgaat 481 cttgagcctt ctccattgca gccatccctg gccgcaactc cagtcccctg gctcaatcag 541 aggtctggag gtcctggctg ctgccagaag aggtggatgg tgtacctgtg tctgctggtg 601 gtgacttccc tgttcctggg ctgccttggt ctcactgtga ccctgattaa gtaccaggag 661 ttgatggaag aactgagaat gttaagcttt cagcagatga cgtggcgaac aaatatgact 721 ggcatggcag ggctagctgg cctgaagcat gacattgccc gtgtaagagc tgacaccaac 781 cagtccctgg tggaactttg gggcttatta gactgccgcc gaattacctg tccTGAAGGC 841 TGGCTGCCCT TTGAGGGCAA GTGTTACTAC TTCTCCCCAA GCACCAAGTC ATGGGATGAG 901 GCCCGGATGT TCTGCCAGGA GAATTACTCT CACTTGGTCA TCATCAATAG CTTTGCTGAG 961 CACAATTTTG TGGCCAAGGC CCATGGCTCT CCACGGGTGT ACTGGCTGGG GCTGAATGAC 1021 AGGGCCCAGG AAGGGGACTG GAGGTGGCTG GATGGGTCTC CTGTGACATT AAGCTTCTGG 1081 GAGCCAGAGG AACCCAATAA CATCCACGAT GAGGACTGTG CTACCATGAA CAAAGGTGGC 1141 ACCTGGAATG ATCTCTCTTG CTACAAAACT ACGTATTGGA TTTGTGAGCG GAAATGTTCC 1201 TGTTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC 1261 CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT 1321 TGGCTTTATA TATCTTGTGG AAAGGACGAT TCACCCTGAA ACTCTCCTAC TGAACGCGTT 1381 AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag att