Construct: ORF ccsbBroadEn_15319

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002074.1_s300c1, BRDN0000456276
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
CLEC17A (388512)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 388512 CLEC17A C-type lectin domain contai... NM_001204118.1 99.9% 17.3% 195_196insC
2 human 388512 CLEC17A C-type lectin domain contai... XM_017026785.2 81.9% 10.3% 0_1ins205
3 human 388512 CLEC17A C-type lectin domain contai... XM_017026786.2 81.9% 10.3% 0_1ins205
4 human 388512 CLEC17A C-type lectin domain contai... XM_017026787.2 81.9% 10.3% 0_1ins205
5 human 388512 CLEC17A C-type lectin domain contai... XM_017026788.2 81.9% 10.3% 0_1ins205
6 human 388512 CLEC17A C-type lectin domain contai... XM_017026789.2 81.9% 10.3% 0_1ins205
7 human 388512 CLEC17A C-type lectin domain contai... NM_207390.3 80.8% 21.3% 195_196insC;894_895ins110;918_919ins106
8 human 388512 CLEC17A C-type lectin domain contai... XM_017026790.2 77.4% 9.3% 0_1ins205;103_104ins51
9 human 388512 CLEC17A C-type lectin domain contai... XM_017026791.2 64.2% 12.9% 0_1ins205;241_242ins201
10 human 388512 CLEC17A C-type lectin domain contai... XM_017026792.1 62.9% 13.2% 0_1ins205;690_691ins110;714_715ins106
11 human 388512 CLEC17A C-type lectin domain contai... XM_017026793.1 52% 15.6% 0_1ins205;538_539ins152;591_592ins187
12 human 388512 CLEC17A C-type lectin domain contai... NR_109784.1 50.9% (many diffs)
13 human 388512 CLEC17A C-type lectin domain contai... NR_109785.1 45.3% (many diffs)
14 human 388512 CLEC17A C-type lectin domain contai... XM_017026794.1 40.7% 18.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
294
ORF length:
225
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCATAATCTG TATTCCATCA CTGGGTACCC GGACCCACCA GGGACCATGG
121AGGAGGAGGA GGAGGATgat gactatgaga actcaacacc tccctacaag gaccttcctc
181ccaagccagg gaccatggag gaggaggagg aggatgatga ctatgagaac tcaacacctc
241cctacaagga ccttcctccc AAGCCCAGGG ACCATGGAGG AGGAGGAGGA GGATGATGAC
301TATGAGAACT CAACACCTCC CTACAAGGAC CTTCCTCCCA AGCCAGGTTC AAGTGCTCCA
361CCAAGACCTC CAAGGGCAGC AAAGGAAACA GAGAAACCCC CACTTCCTTG CAAGCCCCGG
421AACATGACAG GCCTGGACCT CGCCGCTGTC ACCTGTCCAC CTCCTCAACT GGCTGTGAAT
481CTTGAGCCTT CTCCATTGCA GCCATCCCTG GCCGCAACTC CAGTCCCCTG GCTCAATCAG
541AGGTCTGGAG GTCCTGGCTG CTGCCAGAAG AGGTGGATGG TGTACCTGTG TCTGCTGGTG
601GTGACTTCCC TGTTCCTGGG CTGCCTTGGT CTCACTGTGA CCCTGATTAA GTACCAGGAG
661TTGATGGAAG AACTGAGAAT GTTAAGCTTT CAGCAGATGA CGTGGCGAAC AAATATGACT
721GGCATGGCAG GGCTAGCTGG CCTGAAGCAT GACATTGCCC GTGTAAGAGC TGACACCAAC
781CAGTCCCTGG TGGAACTTTG GGGCTTATTA GACTGCCGCC GAATTACCTG TCCTGAAGGC
841TGGCTGCCCT TTGAGGGCAA GTGTTACTAC TTCTCCCCAA GCACCAAGTC ATGGGATGAG
901GCCCGGATGT TCTGCCAGGA GAATTACTCT CACTTGGTCA TCATCAATAG CTTTGCTGAG
961CACAATTTTG TGGCCAAGGC CCATGGCTCT CCACGGGTGT ACTGGCTGGG GCTGAATGAC
1021AGGGCCCAGG AAGGGGACTG GAGGTGGCTG GATGGGTCTC CTGTGACATT AAGCTTCTGG
1081GAGCCAGAGG AACCCAATAA CATCCACGAT GAGGACTGTG CTACCATGAA CAAAGGTGGC
1141ACCTGGAATG ATCTCTCTTG CTACAAAACT ACGTATTGGA TTTGTGAGCG GAAATGTTCC
1201TGTTTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt
1261tgcaacgaac

Download FASTA (ORF) (Full)