Construct: ORF TRCN0000477168

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009312.1_s317c1
Derived from:
ccsbBroadEn_00547
DNA Barcode:
TATCTTTCCCAATCGAGACGCCGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FKTN (2218)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477168
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2218 FKTN fukutin NM_001079802.1 100% 100%
2 human 2218 FKTN fukutin NM_001351496.2 100% 100%
3 human 2218 FKTN fukutin NM_006731.2 100% 100%
4 human 2218 FKTN fukutin XM_017014467.1 100% 100%
5 human 2218 FKTN fukutin XM_017014468.1 100% 100%
6 human 2218 FKTN fukutin XM_017014469.1 94.5% 90.3% (many diffs)
7 human 2218 FKTN fukutin XM_017014464.1 94.3% 89.9% (many diffs)
8 human 2218 FKTN fukutin XM_017014465.1 94.3% 89.9% (many diffs)
9 human 2218 FKTN fukutin XM_017014470.1 94.2% 92.8% (many diffs)
10 human 2218 FKTN fukutin NM_001198963.2 92.9% 92.1% (many diffs)
11 human 2218 FKTN fukutin NM_001351497.2 91.3% 89.8% (many diffs)
12 human 2218 FKTN fukutin XM_011518378.2 87.8% 82.2% (many diffs)
13 human 2218 FKTN fukutin XM_011518368.2 86.1% 79.6% (many diffs)
14 human 2218 FKTN fukutin XM_011518369.2 86.1% 79.6% (many diffs)
15 human 2218 FKTN fukutin XM_011518370.2 86.1% 79.6% (many diffs)
16 human 2218 FKTN fukutin XM_011518371.2 86.1% 79.6% (many diffs)
17 human 2218 FKTN fukutin XM_011518373.2 86.1% 79.6% (many diffs)
18 human 2218 FKTN fukutin XM_011518374.2 86.1% 79.6% (many diffs)
19 human 2218 FKTN fukutin XM_011518375.2 86.1% 79.6% (many diffs)
20 human 2218 FKTN fukutin XM_011518376.2 86.1% 79.6% (many diffs)
21 human 2218 FKTN fukutin XM_017014462.1 86.1% 79.6% (many diffs)
22 human 2218 FKTN fukutin XM_017014463.1 86.1% 79.6% (many diffs)
23 human 2218 FKTN fukutin NM_001351498.2 85.2% 85.9% 1173_1203del;1236_1237ins178
24 human 2218 FKTN fukutin XM_011518379.2 78.3% 70.5% (many diffs)
25 human 2218 FKTN fukutin XM_011518381.3 73.8% 67.5% (many diffs)
26 human 2218 FKTN fukutin XM_017014472.2 73.8% 67.5% (many diffs)
27 human 2218 FKTN fukutin XM_017014473.2 73.8% 67.5% (many diffs)
28 human 2218 FKTN fukutin XR_001746244.2 71.8% (many diffs)
29 human 2218 FKTN fukutin NM_001351499.2 71.3% 71.3% 0_1ins396
30 human 2218 FKTN fukutin NM_001351500.2 71.3% 71.3% 0_1ins396
31 human 2218 FKTN fukutin NM_001351501.2 71.3% 71.3% 0_1ins396
32 human 2218 FKTN fukutin NM_001351502.2 71.3% 71.3% 0_1ins396
33 human 2218 FKTN fukutin XM_011518387.2 68.6% 62.5% (many diffs)
34 human 2218 FKTN fukutin XM_017014475.1 68.6% 62.5% (many diffs)
35 human 2218 FKTN fukutin XR_001746242.2 65.5% (many diffs)
36 human 2218 FKTN fukutin XR_001746243.2 60.1% 1_364del;1537_1858del;1930_1931ins139
37 human 2218 FKTN fukutin XM_011518390.2 59.8% 53.9% (many diffs)
38 human 2218 FKTN fukutin XM_006717014.2 57.7% 55.9% (many diffs)
39 human 2218 FKTN fukutin XM_011518391.2 57.7% 55.9% (many diffs)
40 human 2218 FKTN fukutin XR_002956770.1 18.4% 1_214del;1257_1284del;1626_7482del
41 human 2218 FKTN fukutin NR_147214.2 18.3% 1_123del;1296_1467del;1679_7535del
42 human 2218 FKTN fukutin XR_001746245.1 18.1% 1_214del;1387_1558del;1770_7626del
43 human 2218 FKTN fukutin XR_001746248.1 15.8% (many diffs)
44 human 2218 FKTN fukutin NR_147213.2 14.6% (many diffs)
45 mouse 246179 Fktn fukutin NM_139309.4 87.5% 89.8% (many diffs)
46 mouse 246179 Fktn fukutin XM_006537941.3 80.7% 82.8% (many diffs)
47 mouse 246179 Fktn fukutin XM_017320228.1 80.7% 82.8% (many diffs)
48 mouse 246179 Fktn fukutin XM_006537942.3 75.4% 77.6% (many diffs)
49 mouse 246179 Fktn fukutin XM_017320229.1 75.4% 77.6% (many diffs)
50 mouse 246179 Fktn fukutin XM_006537943.3 46.5% 46.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1452
ORF length:
1383
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagtagaatc aataagaacg tggttttggc ccttttaacg ctgacaagtt
121ctgcatttct gctgtttcag ttgtactact acaagcacta tttatcaaca aagaatggag
181ctggtttgtc aaaatccaaa ggaagccgaa ttggatttga tagcacacag tggcgtgcag
241ttaaaaaatt tattatgtta acatccaacc aaaatgtacc agtgtttctt attgatcctt
301tgatactgga attgattaat aagaactttg aacaagtcaa aaatacttct catggctcta
361cttcacaatg caagtttttc tgtgttccaa gagactttac tgcatttgca ctgcagtatc
421acctatggaa gaatgaggaa ggctggtttc ggatagctga gaatatggga tttcagtgcc
481taaagattga gagtaaagat ccccggctag acgggataga ctcactctct ggaactgaaa
541tccccctgca ctatatctgc aaactggcca ctcatgcgat ccacttggta gtctttcatg
601agaggagtgg caactacctc tggcacggcc acttgagact taaagaacac attgacagga
661aatttgttcc cttccgaaag ttacagtttg gtcgttatcc aggagctttt gacaggccag
721agttacagca agttactgtt gatggactgg aagttctcat tccaaaggat ccaatgcact
781ttgtagaaga agtaccacac tctaggttta ttgagtgtag gtataaagaa gctcgagcat
841tctttcagca gtaccttgat gataacactg tggaagctgt ggcctttcgg aagagtgcaa
901aggaattact gcaactagca gcgaaaacat taaacaaatt gggagtacca ttctggctga
961gcagtggaac ttgtctagga tggtatcgac aatgcaacat tattccttat agcaaagatg
1021ttgacctagg aatttttata caagattaca aatctgatat tattttagca tttcaggatg
1081caggacttcc gctcaaacac aaatttggga aggtagaaga cagcttggaa ctaTCCTTCC
1141AGGGAAAAGA TGATGTAAAA CTTGATGTTT TTTTCTTCTA TGAAGAAACT GATCACATGT
1201GGAATGGAGG CACTCAGGCC AAAACAGGAA AAAAATTCAA ATACCTGTTT CCGAAGTTTA
1261CACTGTGCTG GACTGAGTTT GTAGACATGA AGGTCCATGT ACCCTGTGAA ACCCTCGAAT
1321ACATTGAAGC CAACTATGGT AAGACCTGGA AGATTCCTGT AAAGACGTGG GACTGGAAGC
1381GCTCTCCTCC CAATGTGCAA CCCAATGGAA TCTGGCCTAT TTCTGAGTGG GATGAGGTTA
1441TCCAGTTATA TTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1501ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTC
1561GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATATC TTTCCCAATC GAGACGCCGT
1621ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)