Construct: ORF TRCN0000477821

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012730.1_s317c1
Derived from:
ccsbBroadEn_03836
DNA Barcode:
GCCTGAATCCTAGTTCCCCTCACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ISLR2 (57611)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477821
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57611 ISLR2 immunoglobulin superfamily ... NM_001130136.1 100% 100%
2 human 57611 ISLR2 immunoglobulin superfamily ... NM_001130137.1 100% 100%
3 human 57611 ISLR2 immunoglobulin superfamily ... NM_001130138.1 100% 100%
4 human 57611 ISLR2 immunoglobulin superfamily ... NM_020851.3 100% 100%
5 human 57611 ISLR2 immunoglobulin superfamily ... XM_011521840.3 100% 100%
6 human 57611 ISLR2 immunoglobulin superfamily ... XM_011521841.1 100% 100%
7 human 57611 ISLR2 immunoglobulin superfamily ... XM_024450003.1 100% 100%
8 human 57611 ISLR2 immunoglobulin superfamily ... XM_024450004.1 100% 100%
9 human 57611 ISLR2 immunoglobulin superfamily ... XM_024450005.1 100% 100%
10 human 57611 ISLR2 immunoglobulin superfamily ... XM_024450006.1 100% 100%
11 human 57611 ISLR2 immunoglobulin superfamily ... XM_024450007.1 100% 100%
12 human 57611 ISLR2 immunoglobulin superfamily ... XM_024450008.1 100% 100%
13 human 57611 ISLR2 immunoglobulin superfamily ... XR_931875.3 63.2% (many diffs)
14 human 57611 ISLR2 immunoglobulin superfamily ... XM_017022446.2 62.6% 62.5% 1399_1401delCAT;1404_1405ins834
15 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161536.1 84.6% 89.4% (many diffs)
16 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161537.1 84.6% 89.4% (many diffs)
17 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161538.1 84.6% 89.4% (many diffs)
18 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161539.1 84.6% 89.4% (many diffs)
19 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161540.1 84.6% 89.4% (many diffs)
20 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161541.1 84.6% 89.4% (many diffs)
21 mouse 320563 Islr2 immunoglobulin superfamily ... NM_177193.5 84.6% 89.4% (many diffs)
22 mouse 320563 Islr2 immunoglobulin superfamily ... XM_006511229.3 84.6% 89.4% (many diffs)
23 mouse 320563 Islr2 immunoglobulin superfamily ... XM_006511230.2 84.6% 89.4% (many diffs)
24 mouse 320563 Islr2 immunoglobulin superfamily ... XM_006511231.3 84.6% 89.4% (many diffs)
25 mouse 320563 Islr2 immunoglobulin superfamily ... XM_006511232.3 84.6% 89.4% (many diffs)
26 mouse 320563 Islr2 immunoglobulin superfamily ... XM_006511233.2 84.6% 89.4% (many diffs)
27 mouse 320563 Islr2 immunoglobulin superfamily ... XM_006511234.3 84.6% 89.4% (many diffs)
28 mouse 320563 Islr2 immunoglobulin superfamily ... NM_001161535.1 79.9% 84.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2304
ORF length:
2235
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttccccctt cgggccctgt ggttggtctg ggcgcttcta ggagtggccg
121gatcatgccc ggagccgtgc gcctgcgtgg acaagtacgc tcaccagttc gcggactgcg
181cttacaaaga gttgcgtgag gtgccggaag gactgcctgc caacgtgacg acgcttagtc
241tgtccgcgaa caagatcact gtgctgcggc gcggggcctt cgccgacgtc acacaggtca
301cgtcgctgtg gctggcgcac aatgaggtgc gcaccgtgga gccaggcgca ctggccgtgc
361tgagtcagct caagaacctc gatctgagcc acaacttcat atccagcttt ccgtggagcg
421acctgcgcaa cctgagcgcg ctgcagctgc tcaaaatgaa ccacaaccgc ctgggctctc
481tgccccggga cgcactcggt gcgctacccg acctgcgttc cctgcgcatc aacaacaacc
541ggctgcgtac gctggcgcct ggcaccttcg acgcgcttag cgcgctgtca cacttgcaac
601tctatcacaa tcccttccac tgcggctgcg gccttgtgtg gctgcaggcc tgggccgcga
661gcacccgggt gtccttaccc gagcccgact ccattgcttg tgcctcgcct cccgcgctgc
721agggggtgcc ggtgtaccgc ctgcccgccc tgccctgtgc accgcccagc gtgcatctga
781gtgccgagcc accgcttgaa gcacccggca ccccactgcg cgcaggactg gcgttcgtgt
841tacactgcat cgccgacggc caccctacgc ctcgcctgca atggcaactt cagatccccg
901gtggcaccgt agtcttagag ccaccggttc tgagcgggga ggacgacggg gttggggcgg
961aggaaggaga gggagaagga gatggggatt tgctgacgca gacccaagcc caaacgccga
1021ctccagcacc cgcttggccg gcgcccccag ccacaccgcg cttcctggcc ctcgcaaatg
1081gctccctgtt ggtgcccctc ctgagtgcca aggaggcggg cgtctacact tgccgtgcac
1141acaatgagct gggcgccaac tctacgtcaa tacgcgtggc ggtggcagca accgggcccc
1201caaaacacgc gcctggcgcc gggggagaac ccgacggaca ggccccgacc tctgagcgca
1261agtccacagc caagggccgg ggcaacagcg tcctgccttc caaacccgag ggcaaaatca
1321aaggccaagg cctggccaag gtcagcattc tcggggagac cgagacggag ccggaggagg
1381acacaagtga gggagaggag gccgaagacc agatcctcgc ggacccggcg gaggagcagc
1441gctgtggcaa cggggacccc tctcggtacg tttctaacca cgcgttcaac cagagcgcag
1501agctcaagcc gcacgtcttc gagctgggcg tcatcgcgct ggatgtggcg gagcgcgagg
1561cgcgggtgca gctgactccg ctggctgcgc gctggggccc tgggcccggc ggggctggcg
1621gagccccgcg acccgggcgg cgacccctgc gcctactcta tctgtgtcca gcggggggcg
1681gcgcggcagt gcagtggtcc cgcgtagagg aaggcgtcaa cgcctactgg ttccgcggcc
1741tgcggccggg taccaactac tccgtgtgcc tggcgctggc gggcgaagcc tgccacgtgc
1801aagtggtgtt ttccaccaag aaggagctcc catcgctgct ggtcatagtg gcagtgagcg
1861tattcctcct ggtgctggcc acagtgcccc ttctgggcgc cgcctgctgc catctgctgg
1921ctaaacaccc gggcaagccc taccgtctga tcctgcggcc tcaggccCCT GACCCTATGG
1981AGAAGCGCAT CGCCGCAGAC TTCGACCCGC GTGCTTCGTA CCTCGAGTCC GAGAAAAGCT
2041ACCCGGCAGG CGGCGAGGCG GGCGGCGAGG AGCCAGAGGA CGTGCAGGGG GAGGGCCTTG
2101ATGAAGACGC GGAGCAGGGA GACCCAAGTG GGGACCTGCA GAGAGAGGAG AGCCTGGCGG
2161CCTGCTCACT GGTGGAGTCC CAGTCCAAGG CCAACCAAGA GGAGTTCGAG GCGGGCTCTG
2221AGTACAGCGA TCGGCTGCCC CTGGGCGCCG AGGCGGTCAA CATCGCCCAG GAGATTAATG
2281GCAACTACAG GCAGACGGCA GGCTTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
2341AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
2401TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG CCTGAATCCT
2461AGTTCCCCTC ACCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
2521att

Download FASTA (ORF) (Full)