Construct: ORF TRCN0000477968

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015153.1_s317c1
Derived from:
ccsbBroadEn_08938
DNA Barcode:
TTGTCACCTATGATACTTTATTAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GALNT14 (79623)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477968
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79623 GALNT14 polypeptide N-acetylgalacto... NM_024572.4 99.8% 99.8% 10C>G;492G>A
2 human 79623 GALNT14 polypeptide N-acetylgalacto... NM_001253827.1 94.7% 92.5% (many diffs)
3 human 79623 GALNT14 polypeptide N-acetylgalacto... NM_001329096.2 94.7% 92.5% (many diffs)
4 human 79623 GALNT14 polypeptide N-acetylgalacto... NM_001329095.2 93.1% 92.2% (many diffs)
5 human 79623 GALNT14 polypeptide N-acetylgalacto... NM_001253826.2 93% 87.6% (many diffs)
6 human 79623 GALNT14 polypeptide N-acetylgalacto... XM_017004906.1 92% 90.7% (many diffs)
7 human 79623 GALNT14 polypeptide N-acetylgalacto... XR_001738941.1 84.4% (many diffs)
8 human 79623 GALNT14 polypeptide N-acetylgalacto... NM_001329097.2 78.6% 68.9% (many diffs)
9 human 79623 GALNT14 polypeptide N-acetylgalacto... XR_001738942.1 77.5% (many diffs)
10 human 79623 GALNT14 polypeptide N-acetylgalacto... XM_017004907.1 71.7% 61% (many diffs)
11 human 79623 GALNT14 polypeptide N-acetylgalacto... XR_001738943.1 12.4% (many diffs)
12 mouse 71685 Galnt14 UDP-N-acetyl-alpha-D-galact... NM_027864.2 86.5% 91.3% (many diffs)
13 mouse 71685 Galnt14 UDP-N-acetyl-alpha-D-galact... XM_006524939.3 66.1% 66.5% (many diffs)
14 mouse 71685 Galnt14 UDP-N-acetyl-alpha-D-galact... XM_006524940.3 52.9% 53.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1722
ORF length:
1656
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcg gcgcgtgact cgtcggctgg ttctgccagt cttcggggtg ctctggatca
121cggtgctgct gttcttctgg gtaaccaaga ggaagttgga ggtgccgacg ggacctgaag
181tgcagacccc taagccttcg gacgctgact gggacgacct gtgggaccag tttgatgagc
241ggcggtatct gaatgccaaa aagtggcgcg ttggtgacga cccctataag ctgtatgctt
301tcaaccagcg ggagagtgag cggatctcca gcaatcgggc catcccggac actcgccatc
361tgagatgcac actgctggtg tattgcacgg accttccacc cactagcatc atcatcacct
421tccacaacga ggcccgctcc acgctgctca ggaccatccg cagtgtatta aaccgcaccc
481ctacgcatct gatccgggaa atcatattag tggatgactt cagcaatgac cctgatgact
541gtaaacagct catcaaattg cccaaggtga aatgcttgcg caataatgaa cggcaaggtc
601tggtccggtc ccggattcgg ggcgctgaca tcgcccaggg caccactctg actttcctcg
661acagccactg tgaggtgaac agggactggc tccagcctct gttgcacagg gtcaaagagg
721actacacgcg ggtggtgtgc cctgtgatcg atatcattaa cctggacacc ttcacctaca
781tcgagtctgc ctcggagctc agaggggggt ttgactggag cctccacttc cagtgggagc
841agctctcccc agagcagaag gctcggcgcc tggaccccac ggagcccatc aggactccta
901tcatagctgg agggctcttc gtgatcgaca aagcttggtt tgattacctg gggaaatatg
961atatggacat ggacatctgg ggtggggaga actttgaaat ctccttccga gtgtggatgt
1021gcgggggcag cctagagatc gtcccctgca gccgagtggg gcacgtcttc cggaagaagc
1081acccctacgt tttccctgat ggaaatgcca acacgtatat aaagaacacc aagcggacag
1141ctgaagtgtg gatggatgaa tacaagcaat actattacgc tgcccggcca ttcgccctgg
1201agaggccctt cgggaatgtt gagagcagat tggacctgag gaagaatctg cgctgccaga
1261gcttcaagtg gtacctggag aatatctacc ctgaactcag catccccaag gagtcctcca
1321tccagaaggg caatatccga cagagacaga agtgcctgga atctcaaagg cagaacaacc
1381aagaaacccc aaacctaaag ttgagcccct gtgccaaggt caaaggcgaa gatgcaaagt
1441cccaggtatg ggccttcaca tacacccagc agatcctcca ggaggagctg tgcctgtcag
1501tcatcacctt gttccctggc gccccagtgg ttcttgtcct ttGCAAGAAT GGAGATGACC
1561GACAGCAATG GACCAAAACT GGTTCCCACA TCGAGCACAT AGCATCCCAC CTCTGCCTCG
1621ATACAGATAT GTTCGGTGAT GGCACCGAGA ACGGCAAGGA AATCGTCGTC AACCCATGTG
1681AGTCCTCACT CATGAGCCAG CACTGGGACA TGGTGAGCTC TTGCCCAACT TTCTTGTACA
1741AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1801AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
1861AGGACGATTG TCACCTATGA TACTTTATTA AACGCGTTAA GTCgacaatc aacctctgga
1921ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)