Construct: ORF TRCN0000478692

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005658.1_s317c1
Derived from:
ccsbBroadEn_08941
DNA Barcode:
CTCGTTACAATCCGGCTCGAGTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ROGDI (79641)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478692
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79641 ROGDI rogdi atypical leucine zipper NM_024589.2 99.8% 100% 414G>A
2 human 79641 ROGDI rogdi atypical leucine zipper XM_006720947.4 97.5% 97.2% 414G>A;696_716del
3 human 79641 ROGDI rogdi atypical leucine zipper XM_006720948.4 66.8% 66.6% 0_1ins270;144G>A;426_446del
4 human 79641 ROGDI rogdi atypical leucine zipper NR_046480.1 45.3% (many diffs)
5 mouse 66049 Rogdi rogdi homolog NM_133185.2 87.9% 94.4% (many diffs)
6 mouse 66049 Rogdi rogdi homolog XM_017317109.1 66% 70% (many diffs)
7 mouse 66049 Rogdi rogdi homolog XM_011245993.2 54.9% 57.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
927
ORF length:
861
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc caccgtgatg gcagcgacgg cggcggagcg ggcggtgctg gaggaggagt
121tccgctggct gctgcacgac gaggtgcacg ctgtgttgaa gcagctgcag gacatcctca
181aggaggcctc tctgcgcttc actctgccgg gctccggcac tgaggggccc gccaagcaag
241agaacttcat cctaggcagc tgtggcacag accaggtgaa gggtgtgctg actctgcagg
301gggatgccct cagccaggcg gatgtgaacc tgaagatgcc ccggaacaac cagctgctgc
361acttcgcctt ccgggaggac aagcagtgga agctgcagca gatccaggat gccagaaacc
421atgtgagcca agccatttac ctgcttacca gccgggacca gagctaccag ttcaagacag
481gcgctgaggt cctcaagctg atggacgcag tgatgctgca gctgaccaga gcccgaaacc
541ggctcaccac ccccgccacc cTCACCCTCC CCGAGATCGC CGCCAGCGGC CTCACGCGGA
601TGTTCGCCCC TGCCCTGCCG TCCGACCTGC TGGTCAACGT CTACATCAAC CTCAACAAGC
661TCTGCCTCAC GGTGTACCAG CTGCATGCCC TGCAGCCCAA CTCCACCAAG AACTTCCGCC
721CAGCTGGGGG CGCGGTGCTG CATAGCCCTG GGGCCATGTT CGAGTGGGGC TCTCAGCGCC
781TGGAGGTGAG CCACGTGCAC AAAGTGGAGT GCGTGATCCC CTGGCTCAAC GACGCCCTGG
841TCTACTTCAC CGTCTCCCTG CAGCTCTGCC AGCAGCTCAA GGACAAGATC TCCGTGTTCT
901CCAGCTACTG GAGCTACAGA CCCTTCTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG
961GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1021AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACTCGTTAC
1081AATCCGGCTC GAGTACACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1141aagatt

Download FASTA (ORF) (Full)