Construct: ORF TRCN0000479033
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006258.1_s317c1
- Derived from:
- ccsbBroadEn_02426
- DNA Barcode:
- TCAACTACTTGACCCAAAAACTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARIH2 (10425)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479033
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001317333.2 | 100% | 100% | |
| 2 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349209.2 | 100% | 100% | |
| 3 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349210.2 | 100% | 100% | |
| 4 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349211.2 | 100% | 100% | |
| 5 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_006321.4 | 100% | 100% | |
| 6 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_024453309.1 | 100% | 100% | |
| 7 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349213.2 | 95.5% | 95.3% | 962_1030del |
| 8 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349214.2 | 95.5% | 95.3% | 962_1030del |
| 9 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_011533267.2 | 95.5% | 95.3% | 962_1030del |
| 10 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_011533268.1 | 95.5% | 95.3% | 962_1030del |
| 11 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_024453308.1 | 95.5% | 95.3% | 962_1030del |
| 12 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349215.2 | 95.1% | 85.6% | 1256_1281del;1458_1459ins47 |
| 13 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349217.2 | 83.9% | 82.6% | (many diffs) |
| 14 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349218.2 | 83.9% | 82.6% | (many diffs) |
| 15 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349219.2 | 83.9% | 82.6% | (many diffs) |
| 16 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349220.2 | 83.9% | 82.6% | (many diffs) |
| 17 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349221.2 | 83.9% | 82.6% | (many diffs) |
| 18 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_017005536.2 | 83.9% | 82.6% | (many diffs) |
| 19 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349222.2 | 82.8% | 82.7% | 0_1ins252;2T>A |
| 20 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349223.2 | 82.8% | 82.7% | 0_1ins252;2T>A |
| 21 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349224.2 | 82.8% | 82.7% | 0_1ins252;2T>A |
| 22 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349225.2 | 82.8% | 82.7% | 0_1ins252;2T>A |
| 23 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349226.2 | 82.8% | 82.7% | 0_1ins252;2T>A |
| 24 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_024453310.1 | 82.8% | 82.7% | 0_1ins252;2T>A |
| 25 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349216.2 | 80.1% | 78.8% | (many diffs) |
| 26 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_011533271.1 | 80.1% | 78.8% | (many diffs) |
| 27 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_017005533.2 | 80.1% | 78.8% | (many diffs) |
| 28 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_017005534.1 | 80.1% | 78.8% | (many diffs) |
| 29 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_017005535.1 | 80.1% | 78.8% | (many diffs) |
| 30 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_011533273.1 | 79.1% | 78.8% | 0_1ins252;2T>A;710_778del |
| 31 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001317334.2 | 71.1% | 71.1% | 0_1ins426 |
| 32 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349212.2 | 71.1% | 71.1% | 0_1ins426 |
| 33 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_024453311.1 | 68% | 67.8% | 0_1ins426;536_604del |
| 34 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349227.2 | 60% | 59.8% | 0_1ins549;413_481del |
| 35 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | XM_011533276.1 | 44.7% | 44.5% | 0_1ins786;176_244del |
| 36 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NR_146083.2 | 29.2% | 1_318del;1207_1358del;1950_5064del | |
| 37 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NR_146082.2 | 28.5% | 1_440del;1329_1480del;2072_5186del | |
| 38 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NR_146085.2 | 27.9% | (many diffs) | |
| 39 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NR_146084.2 | 27.7% | (many diffs) | |
| 40 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349228.2 | 19.1% | 17.8% | (many diffs) |
| 41 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349229.2 | 19.1% | 17.8% | (many diffs) |
| 42 | human | 10425 | ARIH2 | ariadne RBR E3 ubiquitin pr... | NM_001349230.2 | 19.1% | 17.8% | (many diffs) |
| 43 | mouse | 23807 | Arih2 | ariadne RBR E3 ubiquitin pr... | NM_011790.4 | 91.4% | 98.1% | (many diffs) |
| 44 | mouse | 23807 | Arih2 | ariadne RBR E3 ubiquitin pr... | XM_006511725.2 | 91.4% | 98.1% | (many diffs) |
| 45 | mouse | 23807 | Arih2 | ariadne RBR E3 ubiquitin pr... | XM_006511728.3 | 77% | 81.4% | (many diffs) |
| 46 | mouse | 23807 | Arih2 | ariadne RBR E3 ubiquitin pr... | XM_011242881.2 | 54.9% | 58.6% | (many diffs) |
| 47 | mouse | 23807 | Arih2 | ariadne RBR E3 ubiquitin pr... | XR_871083.2 | 32.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1545
- ORF length:
- 1479
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc agtggacatg aatagccagg ggtctgacag caatgaagag gactatgacc 121 caaattgtga ggaagaggaa gaagaagaag aagacgaccc tggggacata gaggactatt 181 acgtgggagt agccagcgat gtggagcagc agggggctga tgcctttgat cccgaggagt 241 accagttcac ttgcttgacc tacaaggaat ctgagggtgc cctcaatgag cacatgacca 301 gcttagcttc tgtcctaaag gtatctcatt cagttgctaa acttatatta gttaatttcc 361 actggcaagt ttcagagata ttggacagat acaagtccaa ttctgctcaa ctgcttgttg 421 aggctcgagt tcagcctaat ccatcaaaac atgttcccac atcccatccc cctcaccact 481 gtgcagtgtg tatgcagttt gtgcgaaagg aaaacctact ctctctggcc tgtcagcacc 541 agttttgccg cagctgctgg gagcagcact gctcagttct cgtcaaggac ggcgtgggcg 601 tgggagtctc ttgcatggct caggactgtc cactccgtac accagaggac tttgtgtttc 661 cattgcttcc caatgaagaa ttgagagaga aatacaggcg ctacctcttc agggactatg 721 tggagagtca ttaccagctc cagctgtgcc ctggtgcaga ctgccccatg gttattcggg 781 tacaggagcc tagagctcgc cgagtacagt gcaatcggtg caacgaggtc ttctgtttca 841 agtgtcgtca gatgtatcac gcacccacag actgtgccac aatccggaaa tggctcacga 901 agtgtgcaga cgactctgaa acagccaact acattagtgc tcacactaaa gactgtccca 961 agtgcaacat ctgcattgag aagaatggag gctgcaatca catgcaatgc tccaaatgta 1021 aacacgactt ctgctggatg tgtctaggag attggaagac tcatggcagt gaatactatg 1081 agtgcagtcg ttacaaggag aatcctgaca tcgtgaacca gagccaacaa gcccaggcga 1141 gggaagccct caagaagtac ttattcTACT TTGAGAGGTG GGAAAACCAC AATAAAAGCT 1201 TGCAGCTAGA GGCACAGACA TACCAGCGGA TTCACGAGAA GATTCAGGAG AGGGTCATGA 1261 ACAATCTGGG GACATGGATC GACTGGCAGT ACCTACAGAA TGCTGCCAAG CTCTTGGCCA 1321 AGTGTCGATA CACCCTGCAA TACACCTACC CATATGCATA TTACATGGAG TCCGGACCCA 1381 GGAAGAAGCT GTTTGAATAC CAGCAGGCTC AGCTGGAGGC TGAGATCGAA AACCTCTCAT 1441 GGAAAGTGGA GCGTGCAGAC AGCTATGACA GAGGGGACTT GGAGAACCAG ATGCATATAG 1501 CGGAGCAGCG GAGGAGAACC CTGCTGAAAG ATTTCCATGA CACCTACCCA ACTTTCTTGT 1561 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1621 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1681 GAAAGGACGA TCAACTACTT GACCCAAAAA CTCCACGCGT TAAGTCgaca atcaacctct 1741 ggattacaaa atttgtgaaa gatt