Construct: ORF TRCN0000479330

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002077.1_s317c1
Derived from:
ccsbBroadEn_05004
DNA Barcode:
AGCGGACCGAGCAAAGCTACTGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF420 (147923)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479330
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147923 ZNF420 zinc finger protein 420 NM_144689.5 100% 100%
2 human 147923 ZNF420 zinc finger protein 420 XM_011526503.2 100% 100%
3 human 147923 ZNF420 zinc finger protein 420 XM_011526504.2 100% 100%
4 human 147923 ZNF420 zinc finger protein 420 NM_001329515.2 94.2% 90.3% (many diffs)
5 human 147923 ZNF420 zinc finger protein 420 NM_001329516.2 93.6% 92.8% (many diffs)
6 human 147923 ZNF420 zinc finger protein 420 XM_006723038.3 93.6% 92.8% (many diffs)
7 human 147923 ZNF420 zinc finger protein 420 NM_001329517.1 89.6% 89.6% 0_1ins213
8 human 147923 ZNF420 zinc finger protein 420 NM_001329518.1 89.6% 89.6% 0_1ins213
9 human 147923 ZNF420 zinc finger protein 420 NM_001329519.1 89.6% 89.6% 0_1ins213
10 human 147923 ZNF420 zinc finger protein 420 NM_001329520.1 89.6% 89.6% 0_1ins213
11 human 147923 ZNF420 zinc finger protein 420 XM_011526507.3 89.6% 89.6% 0_1ins213
12 human 147923 ZNF420 zinc finger protein 420 XM_011526508.2 89.6% 89.6% 0_1ins213
13 human 147923 ZNF420 zinc finger protein 420 XM_011526510.2 89.6% 89.6% 0_1ins213
14 human 147923 ZNF420 zinc finger protein 420 XM_017026338.1 89.6% 89.6% 0_1ins213
15 human 147923 ZNF420 zinc finger protein 420 NM_001329521.2 83.3% 82.5% (many diffs)
16 human 147923 ZNF420 zinc finger protein 420 XM_024451382.1 83.3% 82.5% (many diffs)
17 human 147923 ZNF420 zinc finger protein 420 NM_001329522.2 74.6% 69.2% (many diffs)
18 human 147923 ZNF420 zinc finger protein 420 XM_011526511.2 69.5% 68.4% (many diffs)
19 human 147923 ZNF420 zinc finger protein 420 NM_001329524.2 59.2% 58.1% (many diffs)
20 mouse 233058 Zfp420 zinc finger protein 420 NM_172740.2 71.5% 76.3% (many diffs)
21 mouse 233058 Zfp420 zinc finger protein 420 XM_006539873.3 71.5% 76.3% (many diffs)
22 mouse 233058 Zfp420 zinc finger protein 420 XM_011250536.2 71.5% 76.3% (many diffs)
23 mouse 233058 Zfp420 zinc finger protein 420 XM_011250537.2 71.5% 76.3% (many diffs)
24 mouse 233058 Zfp420 zinc finger protein 420 XM_011250538.1 71.5% 76.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2130
ORF length:
2064
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tcggaaatta gtgatgttca gggatgttgc cattgacttc tctcaggaag
121agtgggaatg cctggactct gctcagagag atttgtatag agatgtgatg ttggagaact
181atagcaactt ggtatcacta gacttgcctt caaggtgtgc aagtaaggac ttatctccag
241aaaagaacac ttatgaaaca gaattatccc aatgggaaat gagtgacaga cttgaaaact
301gtgatcttga agagtccaat tccagggatt atttggaagc caaaggcaag atggagaagc
361aacaagaaaa tcagaaggaa tatttcaggc aagggatgat catatatgac aaaatgtcca
421ttttcaacca gcatacttac ttatctcaac attcaagatg tcattctact gagaaaccct
481ataaatgtaa ggaatgtggg aaagccttca gacgagcctc acacctaaca caacatcaaa
541gtattcatac tggtgaaaaa ccctatgaat gtaagcaatg cgggaaggcc tttagtcgtg
601attcacaact cagtcttcat cagagacttc atactggtga gaaaccctat gcatgtaagg
661aatgtgggaa ggcctttact caaagctcac aacttatttt acatcataga attcatactg
721gtgaaaaacc atataaatgt gaagaatgtg ggaaagcctt tattcgtagc tcacaactta
781cccgacatca aaaagttcat actggtgaga aaccttatga atgtaaagaa tgtgggaagg
841cctttactca gaattcacaa cttacactac accagagact tcatactggt gaaaagctct
901atgaatgtaa agaatgtagg aaggtcttta ctcagctctc acaacttatt ctgcataaga
961gaattcatac cggtgagaaa ccctatgaat gtaaggaatg tggaaaagct tttatttgtg
1021gctcacagct ttctcaacat cagaaaattc ataatgggga aaaaccatat gaatgtaagg
1081aatgtggaag ggcctttatt cggggctcac tactgatgca acatcagagg attcatactg
1141gtgaaaaacc ctataaatgt gaagaatgtg ggaaggcctt tatccgtggc tcacaactta
1201ctcaacacca gagaattcac accaatgaaa agccctatga atgtaaggaa tgtggaaaga
1261tgtttagtca tggctcacaa cttactcaac atcagagaat acacactggt gagaaaccct
1321atcaatgtaa ggaatgtgga aaagcgttta atcgtggctc actccttaca cgacaccaga
1381ggattcatac tggtgagaaa ccctatgaat gtaaagaatg tggaaaaacc tttagtcgtg
1441gctcagaact tactcaacat gagcgaattc acacaggtga gaaaccctat gaatgtaagg
1501aatgtgggaa atcttttatt cgtggttccc agcttactca acatcagaga atccatactg
1561gtgagaaacc ttatgaatgt aaagaatgta gaatggcctt tactcagagt tcacatcttt
1621cccaacatca aagacttcac actggtgaga aacccTATGT GTGTAATGAA TGTGGAAAGG
1681CCTTTGCGCG TGGCTTACTA CTTATACAAC ATCAGAGAAT TCATACTGGT GAGAAACCAT
1741ATCAATGTAA GGAATGTGGG AAAGCCTTTA TTCGTGGTTC ACAGTTGACT CAACATCAGC
1801GAATTCACAC TGGAGAAAAA CCCTATGAAT GCAAGGAGTG TGGCAAGGCC TTTAGTCATG
1861GCTCTCAGCT TACTCTACAT CAGAGAATCC ATACTGGTGA GAAGCCCTAT GAATGCAGAG
1921AATGTAGAAA GGCCTTTACT CAGAGTTCAC ATCTTTCTCG GCATCAGAGA ATTCATACTG
1981GTGAGAAACC ATATCAATGT AAGGAATGTG GGAAGGCCTT TACTCGTGGT TCACAGCTAA
2041CTCAACATCA GAGAATTCAT ATCAGTGAGA AATCTTTTGA ATATAAGGAA TGTGGGATTG
2101ACTTTAGTCA TGGCTCACAA GTTTACATGT GCCCAACTTT CTTGTACAAA GTGGTTGATA
2161TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
2221CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAAGCGG
2281ACCGAGCAAA GCTACTGGTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
2341tgaaagatt

Download FASTA (ORF) (Full)