Construct: ORF TRCN0000479369

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000346.1_s317c1
Derived from:
ccsbBroadEn_11645
DNA Barcode:
CTTCTCATCTAATATCCCAATAAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRAK1 (22906)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479369
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22906 TRAK1 trafficking kinesin protein 1 NM_014965.5 99.5% 99.7% (many diffs)
2 human 22906 TRAK1 trafficking kinesin protein 1 NM_001265609.1 95.8% 95.2% (many diffs)
3 human 22906 TRAK1 trafficking kinesin protein 1 NM_001265608.2 89.2% 87.6% (many diffs)
4 human 22906 TRAK1 trafficking kinesin protein 1 NM_001349247.2 80.2% 76.7% (many diffs)
5 human 22906 TRAK1 trafficking kinesin protein 1 XM_024453404.1 80.2% 76.7% (many diffs)
6 human 22906 TRAK1 trafficking kinesin protein 1 XM_005264962.4 78.5% 76.1% (many diffs)
7 human 22906 TRAK1 trafficking kinesin protein 1 XM_006713029.3 78.5% 76.1% (many diffs)
8 human 22906 TRAK1 trafficking kinesin protein 1 XM_011533489.3 78.2% 74.9% (many diffs)
9 human 22906 TRAK1 trafficking kinesin protein 1 XM_017005913.2 76.5% 74.4% (many diffs)
10 human 22906 TRAK1 trafficking kinesin protein 1 NM_001265610.1 76.5% 72.1% (many diffs)
11 human 22906 TRAK1 trafficking kinesin protein 1 XM_006713031.4 75.5% 73.1% (many diffs)
12 human 22906 TRAK1 trafficking kinesin protein 1 XM_005264963.4 75.1% 73.3% (many diffs)
13 human 22906 TRAK1 trafficking kinesin protein 1 XM_006713030.3 75.1% 73.3% (many diffs)
14 human 22906 TRAK1 trafficking kinesin protein 1 NM_001349248.1 72.5% 66.1% (many diffs)
15 human 22906 TRAK1 trafficking kinesin protein 1 XM_017005907.2 71.3% 68.6% (many diffs)
16 human 22906 TRAK1 trafficking kinesin protein 1 NM_001349245.1 70.1% 64.4% (many diffs)
17 human 22906 TRAK1 trafficking kinesin protein 1 XM_017005911.1 70.1% 64.4% (many diffs)
18 human 22906 TRAK1 trafficking kinesin protein 1 NM_001349249.1 69.5% 62.4% (many diffs)
19 human 22906 TRAK1 trafficking kinesin protein 1 NM_001349246.2 68.7% 61.9% (many diffs)
20 human 22906 TRAK1 trafficking kinesin protein 1 XM_024453403.1 68.7% 61.9% (many diffs)
21 human 22906 TRAK1 trafficking kinesin protein 1 XM_017005908.1 68.7% 65.4% (many diffs)
22 human 22906 TRAK1 trafficking kinesin protein 1 XM_017005909.1 66.4% 63.8% (many diffs)
23 human 22906 TRAK1 trafficking kinesin protein 1 NM_001042646.3 66.1% 58.7% (many diffs)
24 human 22906 TRAK1 trafficking kinesin protein 1 XM_024453402.1 66.1% 58.7% (many diffs)
25 human 22906 TRAK1 trafficking kinesin protein 1 XM_024453400.1 65.4% 61.6% (many diffs)
26 human 22906 TRAK1 trafficking kinesin protein 1 XM_024453401.1 65.4% 61.6% (many diffs)
27 human 22906 TRAK1 trafficking kinesin protein 1 XM_017005906.1 64% 60.2% (many diffs)
28 human 22906 TRAK1 trafficking kinesin protein 1 XR_001740059.2 38.2% (many diffs)
29 human 22906 TRAK1 trafficking kinesin protein 1 NR_146089.1 37.4% (many diffs)
30 human 22906 TRAK1 trafficking kinesin protein 1 XR_001740058.2 37.3% (many diffs)
31 human 22906 TRAK1 trafficking kinesin protein 1 XR_001740060.1 35.4% (many diffs)
32 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512234.3 84.7% 87.1% (many diffs)
33 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512233.3 82.3% 86.8% (many diffs)
34 mouse 67095 Trak1 trafficking protein, kinesi... XM_011242992.2 75.9% 77.7% (many diffs)
35 mouse 67095 Trak1 trafficking protein, kinesi... XM_011242994.2 69% 71.2% (many diffs)
36 mouse 67095 Trak1 trafficking protein, kinesi... XM_017313525.1 64.3% 64% (many diffs)
37 mouse 67095 Trak1 trafficking protein, kinesi... XM_011242991.2 64.2% 61.6% (many diffs)
38 mouse 67095 Trak1 trafficking protein, kinesi... XM_017313521.1 63.5% 59.8% (many diffs)
39 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512227.3 62.1% 61.9% (many diffs)
40 mouse 67095 Trak1 trafficking protein, kinesi... NM_175114.3 61.4% 57.6% (many diffs)
41 mouse 67095 Trak1 trafficking protein, kinesi... XM_017313522.1 61.3% 59.6% (many diffs)
42 mouse 67095 Trak1 trafficking protein, kinesi... XM_017313523.1 61.3% 59.6% (many diffs)
43 mouse 67095 Trak1 trafficking protein, kinesi... XM_017313524.1 61.3% 59.6% (many diffs)
44 mouse 67095 Trak1 trafficking protein, kinesi... XM_011242990.2 61.2% 60.8% (many diffs)
45 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512225.3 61% 62.3% (many diffs)
46 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512226.3 60.9% 60.8% (many diffs)
47 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512224.3 60.1% 59.6% (many diffs)
48 mouse 67095 Trak1 trafficking protein, kinesi... XM_006512229.2 59.9% 61.7% (many diffs)
49 mouse 67095 Trak1 trafficking protein, kinesi... XR_001778982.1 35.4% (many diffs)
50 mouse 67095 Trak1 trafficking protein, kinesi... XR_379877.2 32.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2130
ORF length:
2064
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc cctgcgagac aagggcgggg aagaagaatg ttttgaatac gactgccagg
121atgaagagag gaagccaacc cacaggcagc atgacaccca ggacctcttg gaagaggttt
181tatgtgctga aagagttggc cagatgacta agacatataa tgacatagat gctgtcactc
241ggcttcttga ggagaaagag cgggatttag aattggccgc tcgcatcggc cagtcgttgt
301tgaagaagaa caagacccta accgagagga acgagctgct ggaggagcag gtggaacaca
361tcagggagga ggtgtctcag ctccggcatg agctgtccat gaaggatgag ctgcttcagt
421tctacaccag cgctgcggag gagagtgagc ccgagtccgt ttgctcaacc ccgttgaaga
481ggaatgagtc gtcctcctca gtccagaatt actttcattt ggattctctt caaaagaagc
541tgaaagacct tgaagaggag aatgttgtac ttcgatccga ggccagccag ctgaagacag
601agaccatcac ctatgaggag aaggagcagc agctggtcaa tgactgcgtg aaggagctga
661gggatgccaa tgtccagatt gctagtatct cagaggaact ggccaagaag acggaagatg
721ctgcccgcca gcaagaggag atcacacacc tgctatcgca aatagttgat ttgcagaaaa
781aggcaaaagc ttgcgcagtg gaaaatgaag aacttgtcca gcatctgggg gctgctaagg
841atgcccagcg gcagctcaca gccgagctgc gtgagctgga ggacaagtac gcagagtgca
901tggagatgct gcatgaggcg caggaggagc tgaagaacct ccggaacaaa accatgccca
961ataccacgtc tcggcgctac cactcgctgg gcctgtttcc catggattcc ttggcagcag
1021agattgaggg aacgatgcgc aaggagctgc agttggaaga ggccgagtct ccagacatca
1081ctcaccagaa gcgtgtcttt gagacagtaa gaaacatcaa ccaggttgtc aagcagagat
1141ctctgacccc ttctcccatg aacatccccg gctccaacca gtcctcggcc atgaactccc
1201tcctgtccag ctgcgtcagc accccccggt ccagcttcta cggcagcgac ataggcaacg
1261tcgtcctcga caacaagacc aacagcatca ttctggaaac agaggcagcc gacctgggaa
1321acgatgagcg gagtaagaag ccggggacgc cgggcacccc aggctcccac gacctggaga
1381cggcgctgag gcggctgtcc ctgcgccggg agaactacct ctcggagagg aggttctttg
1441aggaggagca agagaggaag ctccaggagc tggcggagaa gggcgagctg cgcagcggct
1501ccctcacacc cactgagagc atcatgtccc tgggcacgca ctcccgcttc tccgagttca
1561ccggcttctc tggcatgtcc ttcagcagcc gctcctacct gcctgagaag ctccagatcg
1621tgaagccgct ggaaggttct gccacacttc accactggca gcagttggcc caacctcacc
1681ttgggggcat cctggacccc cggcctggtg tggtcaccaa gggcttccgg acgctggatg
1741ttgacctgga cgaagtgtac tgccttaacg actttgaaga agatgacaca ggtgaccaca
1801tttctctccc acgcctagct acctccactc cagttcagca cccagagacc tcaggtgaga
1861ggtcccaagc acgtgtgact gtctcaggca gcagaagtta cccgagccgg cctcaggctt
1921ccccagagga gatgcaggag ccgccagcgg ccacggagga ggaggaggag gaggaggaGG
1981AGGAGGAGGA GGGGTCTGGT GAGGGCACCA CGATAAGTCC TGTAAACTTG GCACCTTTCC
2041CGGAGGCAGA GTTTTGGGCC ATTCTCACCT CTGTTCCAGG CACCATCCGT AGTGGTTCTC
2101TGTCTGTAGC TTCCGCTCGT CTGTGTGGGT GCCCAACTTT CTTGTACAAA GTGGTTGATA
2161TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
2221CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACTTCT
2281CATCTAATAT CCCAATAACA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
2341tgaaagatt

Download FASTA (ORF) (Full)