Transcript: Mouse XM_006512233.3

PREDICTED: Mus musculus trafficking protein, kinesin binding 1 (Trak1), transcript variant X14, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Trak1 (67095)
Length:
4663
CDS:
459..2654

Additional Resources:

NCBI RefSeq record:
XM_006512233.3
NBCI Gene record:
Trak1 (67095)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512233.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000294179 TGTACTGCCTTAACGACTTTG pLKO_005 2284 CDS 100% 10.800 15.120 N TRAK1 n/a
2 TRCN0000421920 TGTACTGCCTTAACGACTTTG pLKO_005 2284 CDS 100% 10.800 15.120 N Trak1 n/a
3 TRCN0000126992 CGGTCAGTCATTGTTGAAGAA pLKO.1 821 CDS 100% 4.950 6.930 N Trak1 n/a
4 TRCN0000425028 AGACGGTGAGGAACGTCAATC pLKO_005 1630 CDS 100% 10.800 7.560 N Trak1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512233.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11645 pDONR223 100% 82.3% 86.8% None (many diffs) n/a
2 ccsbBroad304_11645 pLX_304 0% 82.3% 86.8% V5 (many diffs) n/a
3 TRCN0000479369 CTTCTCATCTAATATCCCAATAAC pLX_317 7.7% 82.3% 86.8% V5 (many diffs) n/a
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