Construct: ORF TRCN0000479467

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003485.1_s317c1
Derived from:
ccsbBroadEn_09471
DNA Barcode:
AACCGTGTACGGGCCCCCAACCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSNK1A1L (122011)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479467
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 122011 CSNK1A1L casein kinase 1 alpha 1 like NM_145203.6 99.8% 99.4% 126C>A;674G>A
2 human 1452 CSNK1A1 casein kinase 1 alpha 1 NM_001892.6 91.6% 91% (many diffs)
3 human 1452 CSNK1A1 casein kinase 1 alpha 1 NM_001271741.2 88.3% 89% (many diffs)
4 human 1452 CSNK1A1 casein kinase 1 alpha 1 NM_001025105.3 84.6% 84.1% (many diffs)
5 human 1452 CSNK1A1 casein kinase 1 alpha 1 NM_001271742.2 63.4% 63.8% (many diffs)
6 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_006526388.2 90.1% 91% (many diffs)
7 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 NM_146087.2 86.7% 89% (many diffs)
8 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_006526384.2 83.1% 84.1% (many diffs)
9 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_006526385.2 83.1% 84.1% (many diffs)
10 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_006526386.3 81.3% 81.4% (many diffs)
11 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_006526383.3 81.3% 82.3% (many diffs)
12 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_011247048.2 80.8% 82% (many diffs)
13 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XM_006526387.2 80.1% 82.1% (many diffs)
14 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XR_386023.3 13.1% (many diffs)
15 mouse 93687 Csnk1a1 casein kinase 1, alpha 1 XR_386022.3 12.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1077
ORF length:
1011
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac aaacaacagc ggctccaaag ccgaactcgt tgtgggaggg aaatacaaac
121tggtgcggaa gatcgggtct ggctcctttg gagacgttta tctgggcatc accaccacca
181acggcgagga agtagcagtg aagctggaat ctcagaaggt caagcacccc cagttgctgt
241atgagagcaa actctacacg attcttcaag gtggggttgg catcccccac atgcactggt
301atggtcagga aaaagacaac aatgtgctag tcatggacct tctgggaccc agcctcgaag
361acctctttaa tttctgttca agaaggttca ccatgaaaac tgtacttatg ttagccgacc
421agatgatcag cagaattgaa tacgtgcata caaagaattt tctacaccga gacattaaac
481cagataactt cctgatgggt actgggcgtc actgtaataa gttgttcctt attgattttg
541gtttggccaa aaagtacaga gacaacagga ccaggcaaca cataccgtac agagaagata
601aacacctcat tggcactgtc cgatatgcca gcatcaatgc acatcttggt attgagcaga
661gccgccgaga tgacatggaa TCCTTAGGCT ACGTTTTCAT GTATTTTAAT AGAACCAGCC
721TGCCGTGGCA AGGACTAAAG GCTATGACAA AAAAACAAAA ATATGAAAAG ATTAGTGAGA
781AGAAGATGTC CACCCCTGTT GAAGTTTTAT GTAAGGGGTT TCCTGCAGAA TTCGCCATGT
841ACTTGAACTA CTGTCGTGGG CTGCGCTTTG AGGAAGTCCC AGATTACATG TATCTGAGGC
901AGCTATTCCG CATTCTTTTC AGGACCCTGA ACCACCAATA TGACTACACA TTTGATTGGA
961CGATGTTAAA GCAGAAAGCA GCACAGCAGG CAGCCTCTTC CAGTGGGCAG GGTCAGCAGG
1021CCCAAACCCA GACAGGCAAG CAAACTGAAA AAAACAAGAA TAATGTGAAA GATAACTACC
1081CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1141TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1201ATATATCTTG TGGAAAGGAC GAAACCGTGT ACGGGCCCCC AACCGAACGC GTTAAGTCga
1261caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)