Construct: ORF TRCN0000479474

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011939.1_s317c1
Derived from:
ccsbBroadEn_12245
DNA Barcode:
ACTTCGACCGCAATTTACCACCCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GPATCH2L (55668)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479474
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55668 GPATCH2L G-patch domain containing 2... NM_001322027.2 85.8% 86% (many diffs)
2 human 55668 GPATCH2L G-patch domain containing 2... NM_001322032.1 83.8% 81.9% (many diffs)
3 human 55668 GPATCH2L G-patch domain containing 2... NM_001322026.2 79.2% 74.7% (many diffs)
4 human 55668 GPATCH2L G-patch domain containing 2... XM_017021433.1 77.2% 73.3% (many diffs)
5 human 55668 GPATCH2L G-patch domain containing 2... NM_001322029.1 75.6% 73.9% (many diffs)
6 human 55668 GPATCH2L G-patch domain containing 2... NM_001322028.2 75.4% 73.7% (many diffs)
7 human 55668 GPATCH2L G-patch domain containing 2... XM_017021432.1 73.5% 71.8% (many diffs)
8 human 55668 GPATCH2L G-patch domain containing 2... NM_001322031.1 73.4% 71.7% (many diffs)
9 human 55668 GPATCH2L G-patch domain containing 2... XM_017021431.1 73.3% 71.7% (many diffs)
10 human 55668 GPATCH2L G-patch domain containing 2... NM_001322030.2 72% 70.3% (many diffs)
11 human 55668 GPATCH2L G-patch domain containing 2... NM_017972.3 71.5% 68.1% (many diffs)
12 human 55668 GPATCH2L G-patch domain containing 2... XM_006720191.2 71.5% 68.1% (many diffs)
13 human 55668 GPATCH2L G-patch domain containing 2... XM_017021430.1 71.5% 68.1% (many diffs)
14 human 55668 GPATCH2L G-patch domain containing 2... NM_017926.4 70% 68.4% (many diffs)
15 human 55668 GPATCH2L G-patch domain containing 2... XM_017021429.1 70% 68.4% (many diffs)
16 human 55668 GPATCH2L G-patch domain containing 2... XM_017021428.1 69.7% 66.3% (many diffs)
17 human 55668 GPATCH2L G-patch domain containing 2... XM_017021427.1 68.2% 66.6% (many diffs)
18 human 55668 GPATCH2L G-patch domain containing 2... XR_001750417.1 57.7% (many diffs)
19 human 55668 GPATCH2L G-patch domain containing 2... XR_001750415.1 35.8% (many diffs)
20 human 55668 GPATCH2L G-patch domain containing 2... XR_001750416.1 30.1% (many diffs)
21 human 55668 GPATCH2L G-patch domain containing 2... NR_110314.1 8.3% (many diffs)
22 human 55668 GPATCH2L G-patch domain containing 2... XR_001750418.1 7.1% (many diffs)
23 human 55668 GPATCH2L G-patch domain containing 2... XR_001750414.1 7.1% (many diffs)
24 mouse 70373 Gpatch2l G patch domain containing 2... NM_001324488.1 75.2% 75% (many diffs)
25 mouse 70373 Gpatch2l G patch domain containing 2... XM_006516220.3 73.1% 74.1% (many diffs)
26 mouse 70373 Gpatch2l G patch domain containing 2... NM_027405.3 63.7% 63.6% (many diffs)
27 mouse 70373 Gpatch2l G patch domain containing 2... XM_006516219.2 62.1% 63% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1119
ORF length:
1053
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tgagctggta cacgacttag cctcagcctt ggagcagaca tctgagcaga
121ataagcttgg tgaactgtgg gaggagatgg cgctgagccc ccgacagcag aggcggcagc
181ttcggaaacg ccgaggtcgg aagcgtcgtt ctgacttcac tcacctggca gagcatacct
241gctgctacag cgaggcctct gagtcaagtc tggatgaggc cactaaggac tgtcgagaag
301tggctccggt gaccaatttt agtgactctg atgacacaat ggtagccaaa cgacacccag
361ctctcaatgc cattgtcaag agtaagcaac attcttggca tgaatctgac tcctttactg
421aaaatgcacc ttgtcgacca ctcaggcgca ggcggaaggt gaagcgagtg acatcagagg
481tggctgctag ccttcagcag aagctgaagg tgtcagattg gagctatgag agaggctgca
541ggttcaagtc tgctaagaag cagcgtctgt cccgctggaa ggagaatact ccctggacct
601catcaggcca cggattgtgt gaatcagcag aaaataggac tttcctaagc aaaacaggaa
661ggaaagaaag gatggagtgt gaaacagatg aacaaaaaca gggctctgat gagaacatgt
721cagaatgtga aaccagcagt gtgtgtagca gcagtgacac tgggctcttt accaatgatg
781aagggcgaca aggtgatgac gaacagagtg attGGTTCTA TGAAGGAGAA TGTGTCCCAG
841GATTCACTGT CCCTAATCTT CTGCCCAAGT GGGCTCCTGA TCATTGTTCT GAAGTAGAAA
901GAATGGATTC TGGATTGGAT AAATTTTCTG ATTCCACATT CCTTTTACCT TCTCGGCCAG
961CTCAAAGAGG GTACCATACT CGCTTGAATC GTCTACCTGG AGCTGCAGCT CGATGCCTCA
1021GAAAGGGGCG AAGAAGGCTG GTTGGGAAGG TGATACCTCT CACAGTTAGC TTGGCTCAGT
1081GGGGAGATAA TATTCCCTAT GGGAGTTGTG TATCCTATTA CCCAACTTTC TTGTACAAAG
1141TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1201GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1261ACGAACTTCG ACCGCAATTT ACCACCCCAC GCGTTAAGTC gacaatcaac ctctggatta
1321caaaatttgt gaaagatt

Download FASTA (ORF) (Full)