Construct: ORF TRCN0000479669

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009231.1_s317c1
Derived from:
ccsbBroadEn_08382
DNA Barcode:
GATAAACAAGTCATTGATCTGGAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TOLLIP (54472)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479669
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54472 TOLLIP toll interacting protein NM_019009.4 99.8% 100% 417G>A
2 human 54472 TOLLIP toll interacting protein NM_001318512.2 81.6% 81.7% 32_33ins150;267G>A
3 human 54472 TOLLIP toll interacting protein NM_001318516.2 77.6% 77.7% 181_182ins183;234G>A
4 human 54472 TOLLIP toll interacting protein NM_001318514.1 74.6% 74.8% 0_1ins207;210G>A
5 human 54472 TOLLIP toll interacting protein XM_017017931.1 53.8% 54% 0_1ins378;39G>A
6 human 54472 TOLLIP toll interacting protein NM_001318515.2 29.1% 24.8% 179_180ins427;240_241ins155
7 human 54472 TOLLIP toll interacting protein XR_001747910.2 16.5% (many diffs)
8 mouse 54473 Tollip toll interacting protein NM_023764.3 86% 92.7% (many diffs)
9 mouse 54473 Tollip toll interacting protein NM_001347562.1 83.7% 89% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
888
ORF length:
822
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gaccaccgtc agcactcagc gcgggccggt gtacatcggt gagctcccgc
121aggacttcct ccgcatcacg cccacacagc agcagcggca ggtccagctg gacgcccagg
181cggcccagca gctgcagtac ggaggcgcag tgggcaccgt gggccgactg aacatcacgg
241tggtacaggc aaagttggcc aagaattacg gcatgacccg catggacccc tactgccgac
301tgcgcctggg ctacgcggtg tacgagacgc ccacggcaca caatggcgcc aagaatcccc
361gctggaataa ggtcatccac tgcacggtgc ccccaggcgt ggactctttc tatctcgaga
421tcttcgatga gagagccttc tccatggacg accgcattgc ctggacccac atcaccatcc
481cagagtccct gaggcagggc aaggtggagg acaagtggta cagcctgagc gggaggcagg
541gggacgacaa ggagggcatg atcaacctcg tcatgtccTA CGCGCTGCTT CCAGCTGCCA
601TGGTGATGCC ACCCCAGCCC GTGGTCCTGA TGCCAACAGT GTACCAGCAG GGCGTTGGCT
661ATGTGCCCAT CACAGGGATG CCCGCTGTCT GTAGCCCCGG CATGGTGCCC GTGGCCCTGC
721CCCCGGCCGC CGTGAACGCC CAGCCCCGCT GTAGCGAGGA GGACCTGAAA GCCATCCAGG
781ACATGTTCCC CAACATGGAC CAGGAGGTGA TCCGCTCCGT GCTGGAAGCC CAGCGAGGGA
841ACAAGGATGC CGCCATCAAC TCCCTGCTGC AGATGGGGGA GGAGCCATAC CCAACTTTCT
901TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
961CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
1021GTGGAAAGGA CGAGATAAAC AAGTCATTGA TCTGGAAACG CGTTAAGTCg acaatcaacc
1081tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)