Construct: ORF TRCN0000479820
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006304.2_s317c1
- Derived from:
- ccsbBroadEn_11473
- DNA Barcode:
- CGTGGTACGCCAGCATATGCCAGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NBR2 (10230)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479820
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001039083.4 | 34.8% | 33.8% | (many diffs) |
| 2 | human | 51326 | ARL17A | ADP ribosylation factor lik... | NM_001113738.1 | 34.8% | 33.8% | (many diffs) |
| 3 | human | 100506084 | ARL17B | ADP ribosylation factor lik... | NM_001363805.1 | 33.8% | 32% | (many diffs) |
| 4 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524877.3 | 33.8% | 32% | (many diffs) |
| 5 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546369.3 | 33.8% | 32% | (many diffs) |
| 6 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546389.2 | 33.7% | 32% | (many diffs) |
| 7 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524876.3 | 31.1% | 30.1% | (many diffs) |
| 8 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_017024729.2 | 31.1% | 30.1% | (many diffs) |
| 9 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030180.2 | 31.1% | 30.1% | (many diffs) |
| 10 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_017030176.1 | 30.9% | 30.1% | (many diffs) |
| 11 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XM_011524875.3 | 29.5% | 28.5% | (many diffs) |
| 12 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_011546367.3 | 29.5% | 28.5% | (many diffs) |
| 13 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XM_011546387.2 | 29.3% | 28.5% | (many diffs) |
| 14 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XM_017030179.2 | 28.2% | 27.3% | (many diffs) |
| 15 | human | 105376844 | LOC105376844 | uncharacterized LOC105376844 | XR_934912.3 | 21.1% | (many diffs) | |
| 16 | human | 105376844 | LOC105376844 | uncharacterized LOC105376844 | XR_934914.3 | 20.5% | (many diffs) | |
| 17 | human | 107985086 | LOC107985086 | uncharacterized LOC107985086 | XR_001752899.1 | 19.6% | (many diffs) | |
| 18 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934477.3 | 19.3% | (many diffs) | |
| 19 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756214.1 | 18.7% | (many diffs) | |
| 20 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951555.2 | 18.7% | (many diffs) | |
| 21 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756211.2 | 17.8% | (many diffs) | |
| 22 | human | 105369225 | LOC105369225 | uncharacterized LOC105369225 | XR_001752910.2 | 17.7% | (many diffs) | |
| 23 | human | 105369225 | LOC105369225 | uncharacterized LOC105369225 | XR_001756626.2 | 17.7% | (many diffs) | |
| 24 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934479.2 | 17.6% | (many diffs) | |
| 25 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934475.3 | 16.4% | (many diffs) | |
| 26 | human | 105369225 | LOC105369225 | uncharacterized LOC105369225 | XR_001756625.2 | 16.3% | (many diffs) | |
| 27 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951553.3 | 15.8% | (many diffs) | |
| 28 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934476.3 | 15.7% | (many diffs) | |
| 29 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756217.1 | 14.8% | (many diffs) | |
| 30 | human | 10230 | NBR2 | neighbor of BRCA1 lncRNA 2 | NR_138145.1 | 14.8% | (many diffs) | |
| 31 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951558.2 | 14.8% | (many diffs) | |
| 32 | human | 101929774 | LOC101929774 | uncharacterized LOC101929774 | XR_951565.2 | 14.5% | (many diffs) | |
| 33 | human | 101929774 | LOC101929774 | uncharacterized LOC101929774 | XR_951561.3 | 13.6% | (many diffs) | |
| 34 | human | 10230 | NBR2 | neighbor of BRCA1 lncRNA 2 | NR_003108.2 | 12.3% | (many diffs) | |
| 35 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756215.1 | 12.2% | (many diffs) | |
| 36 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951557.2 | 12.2% | (many diffs) | |
| 37 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_002958881.1 | 11.9% | (many diffs) | |
| 38 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_001756189.1 | 11.5% | (many diffs) | |
| 39 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756213.2 | 11.3% | (many diffs) | |
| 40 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951554.2 | 11.2% | (many diffs) | |
| 41 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756210.2 | 11% | (many diffs) | |
| 42 | human | 100996709 | LOC100996709 | ADP-ribosylation factor-lik... | XR_951556.2 | 9.4% | (many diffs) | |
| 43 | human | 105376844 | LOC105376844 | uncharacterized LOC105376844 | XR_934913.3 | 9.4% | (many diffs) | |
| 44 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934478.3 | 9% | (many diffs) | |
| 45 | human | 51326 | ARL17A | ADP ribosylation factor lik... | XR_934480.3 | 7% | (many diffs) | |
| 46 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756216.2 | 6.9% | (many diffs) | |
| 47 | human | 107984156 | LOC107984156 | ADP-ribosylation factor-lik... | XR_001756212.2 | 6.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 134
- ORF end:
- 323
- ORF length:
- 189
- Sequence:
-
1 GAATTTGCCC TTTTTGAGTT TGGATCTTGG TTCATTCTCA AGCCTCAGAC AGTGGTTCAA 61 AGTTTTTTTC TTCCATTTCA GGTGTCGTGA GGCTAGCATC GATTGATCAA CAAGTTTGTA 121 CAAAAAAGTT GGCATGTGGA AAGGAGGTAG AAGTCATCCT TTCCTCCCCT GTAGCAGCAG 181 GCGTGCAGGC TCTGGTGGTC AGCTGGACTC CATACTCCCC CACCAGTCAC CAGCCTGGGG 241 ACCGTGGGGC TGCAAGGACC TCAGCAGCGG TGTCCCAAGT TTCCTGACTT CTTCCATCCT 301 CTGGAAATCA GCTGTGGTAA AGTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA 361 GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT 421 TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACG TGGTACGCCA 481 GCATATGCCA GAACGCGTTA AGTCgacaat caacctctgg attacaaaat ttgtgaaaga 541 tt