Construct: ORF TRCN0000479876

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004371.1_s317c1
Derived from:
ccsbBroadEn_01300
DNA Barcode:
ACGGCGACACATCCAGGGGTGCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRPSAP2 (5636)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479876
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353101.2 100% 100%
2 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353102.2 100% 100%
3 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353105.2 100% 100%
4 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353106.2 100% 100%
5 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353107.2 100% 100%
6 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_002767.4 100% 100%
7 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XM_017024865.2 100% 100%
8 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XM_017024866.2 100% 100%
9 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001243936.2 89.1% 89.1% 118_119ins120
10 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353096.1 87.8% 87.8% 0_1ins135
11 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353097.2 87.8% 87.8% 0_1ins135
12 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353099.2 87.8% 87.8% 0_1ins135
13 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353098.2 87.2% 87.2% 1_162del
14 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001243940.1 86.7% 86.7% 803_804ins147
15 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001243941.1 76.6% 76.6% 0_1ins258
16 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001243942.1 76.6% 76.6% 0_1ins258
17 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353100.2 76.6% 76.6% 0_1ins258
18 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353103.2 76.6% 76.6% 0_1ins258
19 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... NM_001353104.2 76.6% 76.6% 0_1ins258
20 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XM_017024871.2 76.6% 76.6% 0_1ins258
21 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XM_017024873.2 76.6% 76.6% 0_1ins258
22 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XM_017024874.2 76.6% 76.6% 0_1ins258
23 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XM_017024875.2 76.6% 76.6% 0_1ins258
24 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XR_934068.2 61.4% 1_210del;944_1041del;1177_1178ins238
25 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XR_001752567.2 54.8% 1_210del;943_944ins71;1247_1819del
26 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XR_001752568.2 54.3% 1_259del;993_1090del;1465_2037del
27 human 5636 PRPSAP2 phosphoribosyl pyrophosphat... XR_001752569.2 53.4% 1_259del;992_993ins71;1296_1868del
28 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... NM_001164242.1 90.7% 98.9% (many diffs)
29 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... NM_144806.2 90.7% 98.9% (many diffs)
30 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... XM_006532761.3 90.7% 98.9% (many diffs)
31 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... XM_017314418.1 71% 77.7% (many diffs)
32 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... XM_017314419.1 71% 77.7% (many diffs)
33 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... NM_001164243.1 69.2% 76.1% (many diffs)
34 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... NM_001164244.1 69.2% 76.1% (many diffs)
35 mouse 212627 Prpsap2 phosphoribosyl pyrophosphat... XM_017314420.1 69.2% 76.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1176
ORF length:
1107
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttttgtgtg acgccacctg aattagaaac caagatgaac ataaccaaag
121gtggtctggt gttgttttca gcaaactcga attcatcatg tatggagcta tcaaagaaaa
181ttgcagagcg gctaggggtg gagatgggca aagtgcaggt ttaccaggaa cctaacagag
241aaacaagagt acaaattcaa gagtctgtga ggggaaaaga tgttttcatc atccaaactg
301tttcgaagga cgtgaacacc accatcatgg agctcctgat catggtgtat gcatgtaaga
361cctcttgtgc caagagcatc attggcgtga taccctactt tccttacagc aagcagtgca
421agatgagaaa aagaggctcc attgtctcta aattgctggc ttccatgatg tgcaaagctg
481gtctaactca tcttattact atggatttac accagaagga aattcagggc ttcttcaata
541ttcctgttga caatttaaga gcatctccct tcttattaca gtatattcaa gaagagatcc
601cagattacag gaatgcagta atcgtggcca agtctccagc ctcggcgaag agggcacagt
661cttttgctga gcgcctgcgc ctgggaattg cagtgattca tggagaggcg caggatgccg
721agtcggactt ggtggatgga cggcattccc cacccatggt cagaagtgtg gctgccatcc
781accccagcct ggagatcccc atgctgattc cTAAAGAAAA GCCCCCAATC ACGGTTGTGG
841GTGATGTTGG AGGAAGGATT GCCATCATCG TGGATGACAT CATTGATGAT GTTGACAGCT
901TTCTTGCTGC AGCAGAGACC CTGAAGGAAA GAGGTGCATA TAAGATCTTT GTGATGGCAA
961CTCATGGCTT GTTGTCTTCT GACGCCCCCC GGCGGATTGA AGAGTCTGCC ATTGATGAGG
1021TGGTGGTCAC CAATACAATT CCACATGAAG TCCAGAAGCT CCAGTGCCCC AAGATTAAAA
1081CTGTGGATAT CAGCATGATC CTTTCAGAGG CGATCCGTCG GATCCACAAT GGGGAGTCCA
1141TGTCCTACCT TTTCAGAAAC ATAGGCTTAG ATGACTTGCC AACTTTCTTG TACAAAGTGG
1201TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1261CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1321AACGGCGACA CATCCAGGGG TGCCGACGCG TTAAGTCgac aatcaacctc tggattacaa
1381aatttgtgaa agatt

Download FASTA (ORF) (Full)