Construct: ORF TRCN0000480328

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008888.1_s317c1
Derived from:
ccsbBroadEn_07749
DNA Barcode:
TTATTAAAAGCTTTGCAGTCAATT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPUL1 (11100)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480328
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001321208.2 99.9% 99.8% 4G>A;2112T>C
2 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001321211.2 99.9% 99.8% 4G>A;2112T>C
3 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_144732.5 99.9% 99.8% 4G>A;2112T>C
4 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258463.4 98.6% 98.5% 4G>A;1960_1989del;2142T>C
5 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258464.4 98.6% 98.5% 4G>A;1960_1989del;2142T>C
6 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258465.5 98.6% 98.5% 4G>A;1960_1989del;2142T>C
7 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526393.3 98.6% 98.5% 4G>A;1960_1989del;2142T>C
8 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526394.3 98.6% 98.5% 4G>A;1960_1989del;2142T>C
9 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526395.3 98.6% 98.5% 4G>A;1960_1989del;2142T>C
10 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_001301016.3 98.4% 98.4% 1_33del;37G>A;2145T>C
11 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258461.5 97.2% 97.1% (many diffs)
12 human 11100 HNRNPUL1 heterogeneous nuclear ribon... NM_007040.6 88.2% 88.2% 1_300del;304G>A;2412T>C
13 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_005258459.4 87.2% 87.1% (many diffs)
14 human 11100 HNRNPUL1 heterogeneous nuclear ribon... XM_011526392.3 80.8% 80.7% 1_300del;304G>A;2259_2260ins192
15 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... XM_006539855.3 89.5% 95.3% (many diffs)
16 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... XM_006539856.2 89.5% 95.3% (many diffs)
17 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... NM_144922.2 79.1% 84.3% (many diffs)
18 mouse 232989 Hnrnpul1 heterogeneous nuclear ribon... NM_178089.2 24.7% 25.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2334
ORF length:
2268
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa caatattacc aggcagaacc aattctacga tacccaagtc atcaaacaag
121aaaacgagtc aggctacgag aggagaccac tggaaatgga gcagcagcag gcctatcgtc
181cagaaatgaa gacagagatg aagcaaggag cacccaccag cttcctcccg cctgaagctt
241ctcaactcaa gccagacagg cagcaattcc agagtcgaaa gaggccttat gaagaaaacc
301ggggacgggg gtactttgag caccgagagg ataggagggg ccgctctcct cagcctcctg
361ctgaagagga tgaagatgac tttgatgata cccttgttgc tattgacacc tataactgcg
421acctccactt caaggtggcc cgagatcgga gtagtggcta tccgctcaca attgagggct
481ttgcatacct gtggtcagga gcccgtgcca gctatggggt cagaaggggc cgtgtatgct
541tcgagatgaa gatcaatgag gaaatctccg tgaagcacct tccgtctaca gagcctgacc
601cccacgtggt ccgtatcggc tggtccctgg actcctgcag cacccagcta ggcgaagagc
661ctttctccta tggctatgga ggcactggga agaagtccac caatagccgg tttgaaaact
721acggagacaa gtttgcagag aacgatgtga ttggctgctt tgcggatttt gaatgtggaa
781atgacgtgga actgtctttt accaagaatg gaaagtggat gggcattgct ttccgaatcc
841agaaggaagc cttggggggt caggccctct atcctcatgt cctggtgaag aattgcgcag
901tggagttcaa cttcggacag agagcagagc cctactgttc tgtcctcccg gggtttacct
961tcatccagca ccttcccctt agtgagcgta tccggggcac cgttggacca aagagcaagg
1021cagaatgtga gattctgatg atggtgggcc tgcctgctgc tggcaagacc acatgggcca
1081tcaaacatgc agcctccaac ccttccaaga agtacaacat cctgggtacc aatgccatca
1141tggataagat gcgggtgatg ggcctacgcc ggcagcggaa ctatgctggc cgctgggatg
1201tcctgatcca gcaggccacc cagtgcctca accgcctcat ccagattgct gcccgcaaga
1261aacgcaacta tatcctagat cagacaaatg tttatgggtc agcccagaga cgaaaaatga
1321gaccatttga aggcttccag cgcaaagcta ttgtaatttg tcccactgac gaggacctaa
1381aagaccgaac aataaagcga accgacgagg aagggaagga tgtcccagat catgcggtct
1441tagaaatgaa agccaacttc acgttgccag atgttgggga cttcctggat gaggttctgt
1501tcattgagct gcagcgggag gaagcggaca agctagtgag gcagtacaac gaggaaggcc
1561gcaaggctgg gccaccccct gaaaagcgct ttgacaaccg aggtggtggt ggcttccggg
1621gccgcggggg tggtggtggc ttccagcgct atgaaaaccg aggaccccct ggaggcaacc
1681gtggcggctt ccagaaccga gggggaggca gcggtggagg aggcaactac cgaggaggtt
1741tcaaccgcag cggaggtggt ggctatagcc agaaccgctg gggtaacaac aaccgggata
1801acaacaactc caacaacaga ggcagctaca accgggctcc ccagcaacag ccgccaccac
1861agcagcctcc gccaccacag ccaccacccc agcagccacc gccaccaccc agctacagcc
1921ctgctcggaa ccccccaggg gccagcacct aCAATAAGAA CAGCAACATC CCTGGCTCAA
1981GCGCCAATAC CAGCACCCCC ACCGTCAGCA GCTACAGCCC TCCACAGCCG AGTTACAGCC
2041AGCCACCCTA CAACCAGGGA GGTTACAGCC AGGGCTACAC AGCCCCACCG CCTCCACCTC
2101CACCACCACC TGCCTACAAC TATGGGAGCT ACGGCGGTTA CAACCCGGCC CCCTATACCC
2161CACCGCCACC CCCCACCGCA CAGACCTACC CTCAGCCCAG CTATAACCAG TATCAGCAGT
2221ATGCCCAGCA GTGGAACCAG TACTATCAGA ACCAGGGCCA GTGGCCGCCA TACTACGGGA
2281ACTACGACTA CGGGAGCTAC TCCGGGAACA CACAGGGTGG CACAAGTACA CAGTACCCAA
2341CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
2401ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
2461TATCTTGTGG AAAGGACGAT TATTAAAAGC TTTGCAGTCA ATTACGCGTT AAGTCgacaa
2521tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)