Construct: ORF TRCN0000480484

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001971.1_s317c1
Derived from:
ccsbBroadEn_09136
DNA Barcode:
AAATAACTTCCTAAAATAAATTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TATDN1 (83940)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480484
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83940 TATDN1 TatD DNase domain containing 1 NM_032026.4 99.8% 99.6% 482T>C
2 human 83940 TATDN1 TatD DNase domain containing 1 XM_017013895.2 94.5% 94.2% 0_1ins48;434T>C
3 human 83940 TATDN1 TatD DNase domain containing 1 XM_024447293.1 92.4% 92.2% 21_22ins66;416T>C
4 human 83940 TATDN1 TatD DNase domain containing 1 NM_001317889.1 89% 88.5% 482T>C;589_632del;637_700del
5 human 83940 TATDN1 TatD DNase domain containing 1 XR_428386.4 87% (many diffs)
6 human 83940 TATDN1 TatD DNase domain containing 1 XM_006716671.3 85% 77.2% (many diffs)
7 human 83940 TATDN1 TatD DNase domain containing 1 XM_017013896.2 85% 77.2% (many diffs)
8 human 83940 TATDN1 TatD DNase domain containing 1 XM_017013897.2 85% 77.2% (many diffs)
9 human 83940 TATDN1 TatD DNase domain containing 1 XM_024447294.1 85% 77.2% (many diffs)
10 human 83940 TATDN1 TatD DNase domain containing 1 XM_006716666.4 84.2% 83.7% (many diffs)
11 human 83940 TATDN1 TatD DNase domain containing 1 NM_001146160.1 84% 83.8% 0_1ins141;341T>C
12 human 83940 TATDN1 TatD DNase domain containing 1 XM_017013898.2 84% 83.8% 0_1ins141;341T>C
13 human 83940 TATDN1 TatD DNase domain containing 1 XM_024447295.1 84% 83.8% 0_1ins141;341T>C
14 human 83940 TATDN1 TatD DNase domain containing 1 XM_011517331.3 82.4% 81.9% (many diffs)
15 human 83940 TATDN1 TatD DNase domain containing 1 NM_001317890.1 81.7% 81.4% 0_1ins48;39_40ins114;320T>C
16 human 83940 TATDN1 TatD DNase domain containing 1 NR_027427.1 76.8% (many diffs)
17 human 83940 TATDN1 TatD DNase domain containing 1 XM_006716667.3 75.9% 68.7% (many diffs)
18 human 83940 TATDN1 TatD DNase domain containing 1 XM_006716668.3 75.9% 68.7% (many diffs)
19 human 83940 TATDN1 TatD DNase domain containing 1 XM_006716669.3 75.9% 68.7% (many diffs)
20 human 83940 TATDN1 TatD DNase domain containing 1 XM_006716670.3 74.9% 74.4% (many diffs)
21 human 83940 TATDN1 TatD DNase domain containing 1 XM_017013899.1 66.5% 65.9% (many diffs)
22 human 83940 TATDN1 TatD DNase domain containing 1 NM_001317891.1 51% 50.8% 0_1ins435;47T>C
23 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521365.3 88.3% 90.2% (many diffs)
24 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521367.2 83.8% 85.5% (many diffs)
25 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521366.3 81.2% 81.1% (many diffs)
26 mouse 69694 Tatdn1 TatD DNase domain containing 1 NM_175151.4 79.2% 80.1% (many diffs)
27 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521368.2 74.1% 76% (many diffs)
28 mouse 69694 Tatdn1 TatD DNase domain containing 1 XR_384041.3 68.5% (many diffs)
29 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521373.3 67.9% 69.3% (many diffs)
30 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521371.2 67.7% 70% (many diffs)
31 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521372.2 67.7% 70% (many diffs)
32 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_006521374.2 67.7% 70% (many diffs)
33 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_011245726.1 67.7% 70% (many diffs)
34 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_011245727.1 67.7% 70% (many diffs)
35 mouse 69694 Tatdn1 TatD DNase domain containing 1 XR_384042.3 57% (many diffs)
36 mouse 69694 Tatdn1 TatD DNase domain containing 1 XR_384043.3 48.9% (many diffs)
37 mouse 69694 Tatdn1 TatD DNase domain containing 1 XM_017316744.1 40.2% 39.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
960
ORF length:
891
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagtcgcttc aagtttatcg atattggtat caacttgact gaccctatgt
121tcagaggaat ttataggggg gttcaaaagc atcaagatga cttacaggat gtaataggga
181gagctgtcga gattggtgtt aaaaagttta tgattacagg tggaaatcta caagacagta
241aagatgcact gcatttggca caaacaaatg gtatgttttt cagtacagtt ggatgtcatc
301ctacaagatg tggtgaattt gaaaagaata accctgatct ttacttaaag gagttgctaa
361atcttgctga aaacaataaa gggaaagttg tggcaatagg agaatgcgga cttgattttg
421accgactgca gttttgtccc aaagatactc aactcaaata ttttgaaaaa cagtttgaac
481tgtcagaaca aacaaaatta ccaatgtttc ttcattGTCG AAACTCACAT GCTGAATTTT
541TGGACATAAC GAAAAGAAAT AGAGATCGGT GTGTAGGGGG AGTGGTGCAT TCATTTGATG
601GTACCAAGGA AGCAGCAGCT GCTTTGATTG ACTTGGATCT TTATATAGGA TTTAATGGTT
661GCTCACTGAA AACTGAAGCT AATTTGGAAG TTTTGAAGTC AATTCCTAGT GAAAAATTAA
721TGATTGAGAC AGATGCACCT TGGTGTGGAG TCAAAAGTAC ACATGCTGGA TCAAAATATA
781TAAGAACTGC ATTTCCTACC AAAAAGAAGT GGGAAAGTGG GCACTGCTTA AAAGACAGAA
841ATGAACCCTG CCATATAATT CAAATATTGG AGATAATGTC AGCAGTGAGA GATGAGGATC
901CACTGGAATT AGCCAATACA CTATATAACA ATACTATTAA AGTATTTTTT CCTGGAATAT
961TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1021GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1081TTTATATATC TTGTGGAAAG GACGAAAATA ACTTCCTAAA ATAAATTGCA CGCGTTAAGT
1141Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)