Construct: ORF TRCN0000480502

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008108.1_s317c1
Derived from:
ccsbBroadEn_12354
DNA Barcode:
TCTGGCAGATAGACTCTTAATTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTUS1 (57509)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480502
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57509 MTUS1 microtubule associated scaf... NM_001330470.1 70% 69.8% 1_306del;404A>C
2 human 57509 MTUS1 microtubule associated scaf... NM_001166393.1 57.7% 57.5% 1_525del;623A>C
3 human 57509 MTUS1 microtubule associated scaf... NM_020749.4 54.9% 54.8% 1_588del;686A>C
4 human 57509 MTUS1 microtubule associated scaf... NM_001001931.2 46.3% 46.2% 1_831del;929A>C
5 human 57509 MTUS1 microtubule associated scaf... NM_001001925.2 19.7% 19.6% 1_2928del;3026A>C
6 human 57509 MTUS1 microtubule associated scaf... NM_001363062.1 19.7% 19.6% 1_2928del;3026A>C
7 human 57509 MTUS1 microtubule associated scaf... NM_001363060.2 19.3% 14.6% (many diffs)
8 human 57509 MTUS1 microtubule associated scaf... XM_005273581.3 19.3% 14.6% (many diffs)
9 human 57509 MTUS1 microtubule associated scaf... NM_001001924.2 18.8% 18.8% 1_3090del;3188A>C
10 human 57509 MTUS1 microtubule associated scaf... NM_001363058.1 18.8% 18.8% 1_3090del;3188A>C
11 human 57509 MTUS1 microtubule associated scaf... NM_001363059.1 18.8% 18.8% 1_3090del;3188A>C
12 human 57509 MTUS1 microtubule associated scaf... NM_001363061.1 18.8% 18.8% 1_3090del;3188A>C
13 human 57509 MTUS1 microtubule associated scaf... XM_011544595.3 18.7% 18.6% 1_3090del;3188A>C;3595_3624del
14 human 57509 MTUS1 microtubule associated scaf... NM_001363057.2 18.5% 14% (many diffs)
15 human 57509 MTUS1 microtubule associated scaf... XM_005273578.3 18.5% 14% (many diffs)
16 human 57509 MTUS1 microtubule associated scaf... XM_017013698.2 18.5% 14% (many diffs)
17 human 57509 MTUS1 microtubule associated scaf... XM_017013699.1 18.5% 14% (many diffs)
18 human 57509 MTUS1 microtubule associated scaf... XM_024447213.1 18.5% 14% (many diffs)
19 human 57509 MTUS1 microtubule associated scaf... NR_156437.1 11.5% 1_3341del;3439A>C;4062_6212del
20 human 57509 MTUS1 microtubule associated scaf... XR_001745567.2 7.5% 1_3170del;3268A>C;3464_3465ins426
21 mouse 102103 Mtus1 mitochondrial tumor suppres... NM_001005865.3 46.5% 50.2% (many diffs)
22 mouse 102103 Mtus1 mitochondrial tumor suppres... XM_006509241.3 43.3% 46.8% (many diffs)
23 mouse 102103 Mtus1 mitochondrial tumor suppres... NM_001005864.3 39.3% 42.5% (many diffs)
24 mouse 102103 Mtus1 mitochondrial tumor suppres... NM_001005863.2 16.9% 18.2% (many diffs)
25 mouse 102103 Mtus1 mitochondrial tumor suppres... NM_001286413.1 16.9% 18.2% (many diffs)
26 mouse 102103 Mtus1 mitochondrial tumor suppres... XM_006509239.1 16.2% 17.5% (many diffs)
27 mouse 102103 Mtus1 mitochondrial tumor suppres... XM_006509240.3 16.2% 17.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
786
ORF length:
720
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca attgcaagag cagtttgaca acttaaatgc tgcgcatgaa acctctaagt
121tggaaattga agctagccac tcagagaaac ttgaattgct aacgaaggcc tatgaagcct
181ccctttcaga aattaagaaa ggccatgaaa tagaaaagaa atcgcttgaa gatttacttt
241ctgagaagca ggaatcgcta gagaagcaaa tcaatgatct gaagagtgaa aatgatgctt
301taaatgaaaa attgaaatca gaagaacaaa aaagaagagc aagagaaaaa gcaaatttga
361aaaatccTCA GATCATGTAT CTAGAACAGG AGTTAGAAAG CCTGAAAGCT GTGTTAGAGA
421TCAAGAATGA GAAACTGCAT CAACAGGACA TCAAGTTAAT GAAAATGGAG AAACTGGTGG
481ACAACAACAC AGCATTGGTT GACAAATTGA AGCGTTTCCA GCAGGAGAAT GAAGAATTGA
541AAGCTCGGAT GGACAAGCAC ATGGCAATCT CAAGGCAGCT TTCCACGGAG CAGGCTGTTC
601TGCAAGAGTC GCTGGAGAAG GAGTCGAAAG TCAACAAGCG ACTCTCTATG GAAAACGAGG
661AGCTTCTGTG GAAACTGCAC AATGGGGACC TGTGTAGCCC CAAGAGATCC CCCACATCCT
721CCGCCATCCC TTTGCAGTCA CCAAGGAATT CGGGCTCCTT CCCTAGCCCC AGCATTTCAC
781CCAGATGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
841TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
901CTTGGCTTTA TATATCTTGT GGAAAGGACG ATCTGGCAGA TAGACTCTTA ATTTTACGCG
961TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)