Construct: ORF TRCN0000480589

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014354.1_s317c1
Derived from:
ccsbBroadEn_09439
DNA Barcode:
AAATAACGGCTCGCGCACATTAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARAP1 (116985)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480589
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 116985 ARAP1 ArfGAP with RhoGAP domain, ... NM_001135190.1 99.9% 99.9% 181C>T;1857G>A
2 human 116985 ARAP1 ArfGAP with RhoGAP domain, ... NM_001369489.1 94.8% 94.8% 181C>T;1073_1255del;2040G>A
3 human 116985 ARAP1 ArfGAP with RhoGAP domain, ... NM_015242.4 93.9% 93.9% (many diffs)
4 human 116985 ARAP1 ArfGAP with RhoGAP domain, ... NM_001040118.2 78% 78% (many diffs)
5 human 116985 ARAP1 ArfGAP with RhoGAP domain, ... NR_161388.1 63.8% (many diffs)
6 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... NM_001040112.1 82.3% 87.5% (many diffs)
7 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... NM_027180.3 82.3% 87.5% (many diffs)
8 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508190.1 81.5% 86.7% (many diffs)
9 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508191.3 81.5% 86.7% (many diffs)
10 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508192.1 81.5% 86.7% (many diffs)
11 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508189.2 81.2% 86.2% (many diffs)
12 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508193.1 77.6% 82.7% (many diffs)
13 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... NM_001040111.1 68.2% 72.5% (many diffs)
14 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508186.3 67.7% 71.9% (many diffs)
15 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508187.1 67.7% 71.9% (many diffs)
16 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508188.3 67.7% 71.9% (many diffs)
17 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_011241897.2 67.7% 71.9% (many diffs)
18 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508196.3 63.2% 65.6% (many diffs)
19 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... XM_006508195.3 62.6% 65% (many diffs)
20 mouse 69710 Arap1 ArfGAP with RhoGAP domain, ... NM_198096.1 56.3% 60.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3468
ORF length:
3399
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaccaagaag gaggagcccc caccgagccg agtcccacgg gccgtgcgcg
121tggccagtct gctgagcgag ggagaggaac tgtctgggga cgaccaaggg gatgaggaag
181aggatgacca cgcctatgag ggcgtcccca atggcggatg gcataccagc agcctgagct
241tgtccttgtc cagcacaata gctgcgccac accccatgga cgggccgcct gggggctcca
301cccccgtcac accagtcatc aaggctggct ggctggacaa gaacccaccg cagggatctt
361acatctatca gaaacgatgg gtgagactgg atactgatca cctgcgatac tttgacagta
421acaaggacgc ttactctaag cgctttatct ctgtggcctg catctcccac gtggctgcca
481tcggggacca gaagtttgaa gtgatcacaa acaaccgaac ctttgccttc cgggcagaga
541gtgatgtgga gcggaaggag tggatgcagg ccctgcagca ggccatggct gagcagcgtg
601cccgggcccg gctctctagc gcttatctgc tgggagttcc aggctcagag cagcctgacc
661gcgctggcag cctggagctt cgtggcttca agaataagct gtacgtggcc gtggtcgggg
721acaaagtgca gctctacaag aatctagagg agtaccacct gggcattggc atcaccttca
781tcgacatgag cgtgggcaac gtgaaggaag tggaccggcg cagcttcgac ctcaccacgc
841cctaccgcat cttcagcttc tctgctgact cagagctaga gaaggagcag tggttggagg
901ccatgcaggg agccatcgct gaggccctgt ctacctcgga ggtggccgag cgcatctggg
961ctgcagcccc caacaggttc tgtgctgact gcggggctcc tcagcctgac tgggcctcca
1021tcaacctctg tgttgttatc tgcaagcgct gtgcagggga gcaccgtggc ctgggcgctg
1081gcgtctccaa ggtgcggagc ctgaagatgg acaggaaggt gtggacagaa acacttatcg
1141aggccctgtg tgctgcagtc accaccacag acctggctga gacccaggcg ctcctgggct
1201gtggggctgg gatcaactgc ttctcggggg accctgaggc ccccacgccc ctggctcttg
1261cagagcaggc ggggcagacg ctgcagatgg aattccttcg gaacaaccgg accacagagg
1321tgcctcggct ggactcgatg aagcccctgg aaaagcacta ctcagttgtc ctgccgaccg
1381tgagccacag tggcttcctc tacaagactg cctctgccgg caagctgcta caggaccgcc
1441gggcccggga agagttcagc cggcgctggt gtgtccttgg tgacggggtc ctgagctact
1501ttgagaatga gcgggcagtg acccccaatg gagagattcg ggccagcgag attgtgtgcc
1561tggcagtgcc ccctcctgac acccatggct ttgagcacac ctttgaggtg tacacggagg
1621gagaacggct gtacctgttt gggctggaga gtgcggagca ggctcatgag tgggtcaagt
1681gtattgctaa ggcattcgtg cctcccctag ccgaggatct gctggcccgg gattttgagc
1741ggctgggacg cctaccctac aaagctggcc tgagcctaca gcgggcccag gagggctggt
1801tctctctcag tggctcggag ctccgtgctg tcttcccgga ggggccctgc gaagagccgc
1861tgcaactacg gaaactgcag gagctttcca tccaggggga cagtgagaac caggtgctgg
1921tgctagtgga gcgaaggagg acactgtaca tacagggcga gcggcggctg gacttcatgg
1981gttggctggg ggccatccag aaagcagccg ccagcatggg ggacacgctg tcggagcagc
2041agcttgggga ctcggatatc ccggtgatcg tgtaccgctg tgtggactac atcacgcagt
2101gcggcctgac ctccgagggc atctaccgca agtgtgggca gacatcgaag acacagcggc
2161tgctggagag cctgcggcag gatgcgcgct ctgtgcacct caaggagggc gagcagcacg
2221tggatgatgt ttcctcggcg ctcaagcgct tcctgcgcga cctgcctgat gggctcttca
2281ctcgcgccca gcgcctaacc tggctggagg cctcagagat tgaggacgag gaggagaagg
2341tctccaggta ccgagagctg ctggtgcggc tgccccctgt caaccgggcc acagtgaagg
2401cccttatcag ccacctgtac tgtgttcagt gcttctcaga cacgaaccag atgaacgtgc
2461acaacctggc aattgtgttt gggcccacgc tcttccagac agatgggcag gactacaagg
2521ctggccgtgt ggtggaagac ctcattaacc actatgtggt ggtgtttagt gtggatgagg
2581aagagctcag gaagcagcgg gaggagatca ctgccattgt gaagatgcgc gtggctggca
2641ctgccagtgg gacccagcat gccggtgact tcatctgcac agtgtatctg gaagagaaga
2701aggcagagac tgagcagcat atcaaggtcc cagcatccat gactgctgag gagctcaccc
2761tggagatcct ggatcgccgg aacgtgggca tcagggagaa ggactattgg acctgctttg
2821aggtcaacga gagggaggag gcagagcgcc ccctgcactt tgcggagaag gtgctgccca
2881tcctgcacgg gctgggcacg gacagccacc tggtggtgaa gaagcaccag gccatggagg
2941ccatgctgct gtacctggcc agccgtgtcg gtgacaccaa gcatggcatg atgaagttcc
3001gtgaggaccg cagcctcctg ggcctgggcc tgccctcagg tggcttccac gatcgctact
3061tcatcctcaa cagcagctgc ttgcggctct acaaggaggt ccggagtcac cggccTGAGA
3121AGGAGTGGCC TATTAAGAGT CTCAAAGTCT ACCTGGGAGT GAAGAAGAAA CTCAGGCCAC
3181CCACCTGCTG GGGCTTCACA GTGGTGCATG AGACAGAGAA ACATGAGAAG CAGCAGTGGT
3241ACCTCTGCTG TGACACACAG ATGGAGCTCC GGGAGTGGTT CGCTACCTTT CTGTTTGTGC
3301AGCATGACGG CCTGGTGTGG CCCTCAGAGC CCTCACGCGT GTCCCGGGCA GTGCCTGAGG
3361TCCGGCTGGG TAGTGTGTCA CTGATCCCCC TTCGAGGTAG TGAAAATGAA ATGCGCCGGA
3421GTGTGGCTGC CTTCACCGCG GACCCTCTGT CTCTTCTGCG CAACGTCTTG CCAACTTTCT
3481TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
3541CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
3601GTGGAAAGGA CGAAAATAAC GGCTCGCGCA CATTAATACG CGTTAAGTCg acaatcaacc
3661tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)