Construct: ORF TRCN0000480651

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000793.1_s317c1
Derived from:
ccsbBroadEn_07388
DNA Barcode:
TCTCTGACGTCAGCACCCCTAAAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIP4 (9325)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480651
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9325 TRIP4 thyroid hormone receptor in... NM_016213.5 99.8% 100% 1258T>C;1596G>A
2 human 9325 TRIP4 thyroid hormone receptor in... NR_135855.2 80.1% (many diffs)
3 human 9325 TRIP4 thyroid hormone receptor in... NM_001321924.2 60.2% 60.4% 0_1ins690;568T>C;906G>A
4 mouse 56404 Trip4 thyroid hormone receptor in... NM_019797.4 88.8% 88.6% (many diffs)
5 mouse 56404 Trip4 thyroid hormone receptor in... XM_006511296.3 88.8% 88.6% (many diffs)
6 mouse 56404 Trip4 thyroid hormone receptor in... XM_006511298.3 88.8% 88.6% (many diffs)
7 mouse 56404 Trip4 thyroid hormone receptor in... XM_006511299.3 88.8% 88.6% (many diffs)
8 mouse 56404 Trip4 thyroid hormone receptor in... XM_017313492.1 88.8% 88.6% (many diffs)
9 mouse 56404 Trip4 thyroid hormone receptor in... NM_001170907.1 81.9% 78.9% (many diffs)
10 mouse 56404 Trip4 thyroid hormone receptor in... XM_017313493.1 81.9% 78.9% (many diffs)
11 mouse 56404 Trip4 thyroid hormone receptor in... XM_017313494.1 69.4% 66.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1809
ORF length:
1743
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggtggctggg gcggtgtccg gggagccgct ggtgcactgg tgcacccagc
121agttgcggaa gactttcggc ctggatgtca gcgaggagat cattcagtac gttttgtcaa
181ttgagagtgc tgaagagata cgagaatatg ttactgatct cctccaggga aatgaaggca
241aaaaaggtca attcatagaa gaacttataa ccaaatggca aaagaatgat caggagttga
301tttcggatcc tttgcagcag tgcttcaaaa aagatgaaat tttagatggg cagaaatcag
361gcgaccatct aaagcggggt aggaagaaag ggagaaacag acaggaagtt cctgcattta
421ctgaacctga cacgactgca gaggttaaaa caccttttga tttggccaag gcacaagaga
481acagcaactc cgtaaagaag aagacaaagt ttgtcaattt atacacaaga gagggacagg
541acaggcttgc agtcctgctc cctggtcgtc acccttgtga ttgcctgggc cagaagcaca
601agctcatcaa taactgtctg atctgtgggc gcattgtctg tgaacaagaa ggctcaggcc
661cttgcttatt ctgtggcact ctggtgtgta ctcatgagga acaagatatt ttacagcgtg
721actcaaacaa gagccagaaa ctgctaaaga aactcatgtc aggagtggag aattctggaa
781aggtggacat ctctaccaag gaccttcttc ctcatcaaga attgcgaatt aagtctggtc
841tggagaaggc tatcaagcat aaagacaaac tgttagagtt tgacagaact agtattcgaa
901ggacccaagt cattgatgat gagtcagatt actttgccag tgattctaac caatggttgt
961ccaaacttga gcgggaaacc ttgcagaagc gagaggagga gctgagagaa cttcgacacg
1021cctctcgact ttctaagaag gtcaccattg actttgcagg aaggaagatc ctggaagaag
1081aaaattcact agcagagtat catagcagac tagatgagac aatacaggcc attgccaatg
1141gaaccttgaa ccagccactg accaaattgg atagatcttc tgaagagcct ttgggagttc
1201tggtaaatcc caacatgtac cagtcccctc cccagtgggt tgaccacaca ggtgcagcct
1261cacagaagaa ggctttccgt tcttcaggat ttggactaga gttcaactca tttcagcacc
1321agctgcgaat ccaggatcaa gaatttcagg aaggctttga tggtggctgg tgcctctctg
1381tacatcagcc ctgggcTTCT CTGCTTGTCA GAGGGATTAA AAGGGTGGAG GGCAGATCCT
1441GGTACACCCC CCACAGAGGA CGACTTTGGA TAGCAGCCAC AGCTAAAAAA CCCTCCCCTC
1501AAGAAGTCTC AGAACTCCAG GCTACATATC GTCTTCTTCG TGGGAAAGAT GTGGAATTTC
1561CTAATGACTA TCCGTCAGGT TGTCTTCTGG GCTGTGTGGA CCTAATTGAC TGCTTGTCCC
1621AGAAGCAATT TAAGGAGCAG TTTCCAGACA TCAGTCAAGA ATCTGATTCT CCATTTGTTT
1681TCATCTGCAA AAATCCTCAG GAAATGGTTG TGAAGTTTCC TATTAAAGGA AATCCAAAAA
1741TCTGGAAATT GGATTCCAAG ATCCATCAAG GAGCAAAGAA GGGGTTAATG AAGCAGAATA
1801AAGCTGTCTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
1861CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
1921TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATCTCTG ACGTCAGCAC CCCTAAAAAC
1981GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)