Construct: ORF TRCN0000480675

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005476.2_s317c1
Derived from:
ccsbBroadEn_00600
DNA Barcode:
AAGCGACCCCAGTCACTCCCGACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FYN (2534)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480675
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2534 FYN FYN proto-oncogene, Src fam... NM_153048.3 100% 100%
2 human 2534 FYN FYN proto-oncogene, Src fam... XM_005266892.4 100% 100%
3 human 2534 FYN FYN proto-oncogene, Src fam... NM_153047.4 90.2% 90.2% 697_852del
4 human 2534 FYN FYN proto-oncogene, Src fam... NM_001370529.1 89.7% 89.7% 697_861del
5 human 2534 FYN FYN proto-oncogene, Src fam... NM_002037.5 89.7% 89.7% 697_861del
6 human 2534 FYN FYN proto-oncogene, Src fam... XM_017010650.1 89.7% 89.7% 697_861del
7 human 2534 FYN FYN proto-oncogene, Src fam... XM_017010651.1 89.7% 89.7% 697_861del
8 human 2534 FYN FYN proto-oncogene, Src fam... XM_017010652.1 89.7% 89.7% 697_861del
9 human 2534 FYN FYN proto-oncogene, Src fam... XM_017010653.1 89.7% 89.7% 697_861del
10 human 2534 FYN FYN proto-oncogene, Src fam... XM_017010655.2 58.9% 48.9% (many diffs)
11 mouse 14360 Fyn Fyn proto-oncogene NM_001122892.1 83.5% 89.7% (many diffs)
12 mouse 14360 Fyn Fyn proto-oncogene NM_008054.2 83.5% 89.7% (many diffs)
13 mouse 14360 Fyn Fyn proto-oncogene NM_001122893.1 83% 89.1% (many diffs)
14 mouse 14360 Fyn Fyn proto-oncogene XM_006512539.3 83% 89.1% (many diffs)
15 mouse 14360 Fyn Fyn proto-oncogene XM_006512540.3 83% 89.1% (many diffs)
16 mouse 14360 Fyn Fyn proto-oncogene XM_011243117.2 83% 89.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1512
ORF length:
1446
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg ctgtgtgcaa tgtaaggata aagaagcaac aaaactgacg gaggagaggg
121acggcagcct gaaccagagc tctgggtacc gctatggcac agaccccacc cctcagcact
181accccagctt cggtgtgacc tccatcccca actacaacaa cttccacgca gccgggggcc
241aaggactcac cgtctttgga ggtgtgaact cttcgtctca tacggggacc ttgcgtacga
301gaggaggaac aggagtgaca ctctttgtgg ccctttatga ctatgaagca cggacagaag
361atgacctgag ttttcacaaa ggagaaaaat ttcaaatatt gaacagctcg gaaggagatt
421ggtgggaagc ccgctccttg acaactggag agacaggtta cattcccagc aattatgtgg
481ctccagttga ctctatccag gcagaagagt ggtactttgg aaaacttggc cgaaaagatg
541ctgagcgaca gctattgtcc tttggaaacc caagaggtac ctttcttatc cgcgagagtg
601aaaccaccaa aggtgcctat tcactttcta tccgtgattg ggatgatatg aaaggagacc
661atgtcaaaca ttataaaatt cgcaaacttg acaatggtgg atactacatt accacccggg
721cccagtttga aacacttcag cagcttgtac aacattactc aggtacctgg aatggaaaca
781caaaagtagc cataaagact cttaaaccag gcacaatgtc ccccgaatca ttccttgagg
841aagcgcagat catgaagaag ctgaagcacg acaagctggt ccagctctat gcagtggtgt
901ctgaggagcc catctacatc gtcaccgagt atatgaacaa aggaagttta ctggatttct
961taaaagatgg agaaggaaga gctctgaaat taccaaatct tgtggacatg gcagcacagg
1021tggctgcagg aatggcttac atcgagcgca tgaattatat ccatagagat ctgcgatcag
1081caaacattct agtggggaat ggacTCATAT GCAAGATTGC TGACTTCGGA TTGGCCCGAT
1141TGATAGAAGA CAATGAGTAC ACAGCAAGAC AAGGTGCAAA GTTCCCCATC AAGTGGACGG
1201CCCCCGAGGC AGCCCTGTAC GGGAGGTTCA CAATCAAGTC TGACGTGTGG TCTTTTGGAA
1261TCTTACTCAC AGAGCTGGTC ACCAAAGGAA GAGTGCCATA CCCAGGCATG AACAACCGGG
1321AGGTGCTGGA GCAGGTGGAG CGAGGCTACA GGATGCCCTG CCCGCAGGAC TGCCCCATCT
1381CTCTGCATGA GCTCATGATC CACTGCTGGA AAAAGGACCC TGAAGAACGC CCCACTTTTG
1441AGTACTTGCA GAGCTTCCTG GAAGACTACT TTACCGCGAC AGAGCCCCAG TACCAACCTG
1501GTGAAAACCT GTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1561ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1621CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAAG CGACCCCAGT CACTCCCGAC
1681CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)