Construct: ORF TRCN0000480915

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001940.1_s317c1
Derived from:
ccsbBroadEn_11480
DNA Barcode:
TTGACTCAACGCGCCATCTCGTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAK4 (10298)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480915
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10298 PAK4 p21 (RAC1) activated kinase 4 NM_001014834.3 89.6% 84.7% (many diffs)
2 human 10298 PAK4 p21 (RAC1) activated kinase 4 NM_001014835.2 89.6% 84.7% (many diffs)
3 human 10298 PAK4 p21 (RAC1) activated kinase 4 XM_011526320.1 89.6% 84.7% (many diffs)
4 human 10298 PAK4 p21 (RAC1) activated kinase 4 XM_024451314.1 89.6% 84.7% (many diffs)
5 human 10298 PAK4 p21 (RAC1) activated kinase 4 NM_001014831.3 72% 71.9% 357_528del;532_854del
6 human 10298 PAK4 p21 (RAC1) activated kinase 4 NM_001014832.2 72% 71.9% 357_528del;532_854del
7 human 10298 PAK4 p21 (RAC1) activated kinase 4 NM_005884.4 72% 71.9% 357_528del;532_854del
8 human 10298 PAK4 p21 (RAC1) activated kinase 4 XM_011526316.1 72% 71.9% 357_528del;532_854del
9 human 10298 PAK4 p21 (RAC1) activated kinase 4 XM_011526317.2 72% 71.9% 357_528del;532_854del
10 human 10298 PAK4 p21 (RAC1) activated kinase 4 XM_011526318.2 72% 71.9% 357_528del;532_854del
11 human 10298 PAK4 p21 (RAC1) activated kinase 4 XM_011526319.2 72% 71.9% 357_528del;532_854del
12 mouse 70584 Pak4 p21 protein (Cdc42/Rac)-act... NM_027470.3 63.9% 70.1% (many diffs)
13 mouse 70584 Pak4 p21 protein (Cdc42/Rac)-act... XM_017312296.1 63.9% 70.1% (many diffs)
14 mouse 70584 Pak4 p21 protein (Cdc42/Rac)-act... XM_017312297.1 63.9% 70.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt tgggaagagg aagaagcggg tggagatctc cgcgccgtcc aacttcgagc
121accgcgtgca cacgggcttc gaccagcacg agcagaagtt cacggggctg ccccgccagt
181ggcagagcct gatcgaggag tcggctcgcc ggcccaagcc cctcgtcgac cccgcctgca
241tcacctccat ccagcccggg gcccccaaga ccatcgtgcg gggcagcaaa ggtgccaaag
301atggggccct cacgctgctg ctggacgagt ttgagaacat gtcggtgaca cgctccaact
361ccctgcggag agacagcccg ccgccgcccg cccgtgcccg ccaggaaaat gggatgccag
421aaaagccccc tggcccccgc tcaccacagc gggagccaca gcgagtatcc catgagcagt
481tccgggctgc cctgcagctg gtggtggacc caggcgaccc ccgctcctac ctggacaact
541tcatcaagat tggcgagggc tccacgggca tcgtgtgcat cgccaccgtg cgcagctcgg
601gcaagctggt ggccgtcaag aagatggacc tgcgcaagca gcagaggcgc gagctgctct
661tcaacgaggt ggtaatcatg agggactacc agcacgagaa tgtggtggag atgtacaaca
721gctacctggt gggggacgag ctctgggtgg tcatggagtt cctggaagga ggcgccctca
781ccgacatcgt cacccacacc aggatgaacg aggagcagat cgcggccgtg tgccttgcag
841tgctgcaggc cctgtcggtg ctccacgccc agggcgtcat ccaccgggac atcaagagcg
901actcgatcct gctgacccat gatggcaggg tgaagctgtc agactttggg ttctgcgccc
961aggtgagcaa ggaagtgccc cgaaggaagt cgctggtcgg cacgcccTAC TGGATGGCCC
1021CAGAGCTCAT CTCCCGCCTT CCCTACGGGC CAGAGGTAGA CATCTGGTCG CTGGGGATAA
1081TGGTGATTGA GATGGTGGAC GGAGAGCCCC CCTACTTCAA CGAGCCACCC CTCAAAGCCA
1141TGAAGATGAT TCGGGACAAC CTGCCACCCC GACTGAAGAA CCTGCACAAG GTGTCGCCAT
1201CCCTGAAGGG CTTCCTGGAC CGCCTGCTGG TGCGAGACCC TGCCCAGCGG GCCACGGCAG
1261CCGAGCTGCT GAAGCACCCA TTCCTGGCCA AGGCAGGGCC GCCTGCCAGC ATCGTGCCCC
1321TCATGCGCCA GAACCGCACC AGATGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1381AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1441TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT TGACTCAACG
1501CGCCATCTCG TTCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1561att

Download FASTA (ORF) (Full)