Construct: ORF TRCN0000480973

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007906.2_s317c1
Derived from:
ccsbBroadEn_14269
DNA Barcode:
GTTGCTATTCGAGCTCAACGTCCT
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NARS2 (79731)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480973
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79731 NARS2 asparaginyl-tRNA synthetase... NM_024678.6 99.7% 98.9% 260A>C;414T>C;1419delT
2 human 79731 NARS2 asparaginyl-tRNA synthetase... XM_011545253.2 97.9% 97% (many diffs)
3 human 79731 NARS2 asparaginyl-tRNA synthetase... XM_017018302.2 64.7% 64.1% (many diffs)
4 human 79731 NARS2 asparaginyl-tRNA synthetase... XR_001747964.2 57.1% (many diffs)
5 human 79731 NARS2 asparaginyl-tRNA synthetase... XR_001747965.2 56.1% (many diffs)
6 human 79731 NARS2 asparaginyl-tRNA synthetase... XR_001747966.2 55.8% (many diffs)
7 human 79731 NARS2 asparaginyl-tRNA synthetase... NM_001243251.1 52.3% 51.5% 0_1ins681;738delT
8 human 79731 NARS2 asparaginyl-tRNA synthetase... XM_017018303.1 52.3% 51.5% 0_1ins681;738delT
9 human 79731 NARS2 asparaginyl-tRNA synthetase... XM_017018304.2 50.4% 49.6% 0_1ins681;580_581ins27;711delT
10 human 79731 NARS2 asparaginyl-tRNA synthetase... XR_001747963.2 33.4% (many diffs)
11 mouse 244141 Nars2 asparaginyl-tRNA synthetase... NM_153591.4 85.5% 83.8% (many diffs)
12 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XM_017322252.1 78.9% 77.3% (many diffs)
13 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XM_006507816.1 77.3% 75.6% (many diffs)
14 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XM_006507817.3 74.6% 72.2% (many diffs)
15 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XM_011241794.2 51.4% 51.1% (many diffs)
16 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785547.1 50% (many diffs)
17 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XM_006507821.2 49.4% 45.8% (many diffs)
18 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785548.1 48.8% (many diffs)
19 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785555.1 48.6% (many diffs)
20 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_378243.1 47.6% (many diffs)
21 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785557.1 47.4% (many diffs)
22 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785553.1 47.4% (many diffs)
23 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785554.1 46.3% (many diffs)
24 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785550.1 44.8% (many diffs)
25 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785549.1 44.3% (many diffs)
26 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785556.1 44% (many diffs)
27 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785551.1 43.8% (many diffs)
28 mouse 244141 Nars2 asparaginyl-tRNA synthetase... XR_001785558.1 43% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1497
ORF length:
1431
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct gggggtccgc tgcctgctgc ggtccgtgcg cttctgttcc tccgccccct
121tccccaagca caaaccttca gccaaactga gcgtgcggga cgctctcggg gctcagaacg
181cgagtgggga gcgcattaag atccagggat ggattcgttc tgtccgatcc cagaaggaag
241tcttgttcct gcatgtaaat gatgggtcat ctttggaaag ccttcaggtt gttgcagatt
301caggccttga cagtagagaa ttaacttttg ggagttctgt ggaagtacaa gggcagctga
361taaaaagtcc atccaaaagg caaaatgtgg aactgaaggc agaaaaaatt aaagttattg
421gaaattgtga tgccaaggat ttccccatca aatataaaga gaggcatcct ctggagtacc
481tgcgacaata tcctcacttt aggtgtagga ctaacgttct gggttctata ttgaggattc
541gcagtgaagc gacagctgct attcattctt tctttaagga cagtggcttt gtacatattc
601atactccaat aatcacatcc aatgactctg agggagctgg agaacttttt caacttgaac
661cttcaggcaa acttaaggta cctgaggaga atttcttcaa tgttcctgct ttcttaactg
721tctcaggaca acttcatcta gaagtgatgt caggagcttt tactcaagtg tttacctttg
781gtccgacctt ccgagctgaa aattctcaga gccggaggca cctggcagag ttttatatga
841tagaagcaga gatttctttt gttgacagcc ttcaagatct tatgcaggtt atagaggaac
901tgttcaaggc tacaacaatg atggttctct caaaatgtcc tgaagatgtt gaactctgtc
961acaaattcat agcacctggc caaaaggaca gattagaaca tatgctaaaa aacaactttt
1021taatcatttc ttatactgaa gcagtggaga tcttaaagca agcatcccag aacttcacct
1081ttaccccaga gtggggtgct gaccTACGGA CTGAACATGA AAAGTACCTG GTGAAGCACT
1141GTGGCAACAT ACCTGTCTTC GTTATTAATT ATCCATTAAC ACTCAAGCCT TTCTACATGA
1201GGGATAATGA AGATGGCCCT CAGCACACGG TTGCTGCTGT TGATCTTCTG GTTCCTGGAG
1261TTGGGGAACT CTTTGGAGGA GGCCTCAGAG AAGAACGATA CCATTTCTTA GAGGAGCGCT
1321TAGCCAGATC GGGACTTACA GAAGTCTACC AATGGTATCT GGACCTTCGT CGATTTGGAT
1381CTGTGCCACA TGGAGGTTTT GGGATGGGAT TTGAACGCTA CCTGCAGTGC ATCTTGGGTG
1441TTGACAATAT CAAAGATGTT ATCCCTTTCC CAAGGTTTCC TCATCATGCC TTTTATACCC
1501AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT
1561CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA
1621TATATCTTGT GGAAAGGACG AGTTGCTATT CGAGCTCAAC GTCCTACGCG TTAAGTCgac
1681aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)

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