Construct: ORF TRCN0000481038

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014178.1_s317c1
Derived from:
ccsbBroadEn_10630
DNA Barcode:
GTGACAGGGAACAATCAAACCCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT14P1 (401135)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481038
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 255928 SYT14 synaptotagmin 14 XM_017000935.2 50.4% 43.2% (many diffs)
2 human 255928 SYT14 synaptotagmin 14 NM_001256006.1 33% 28.4% (many diffs)
3 human 255928 SYT14 synaptotagmin 14 XM_017000932.2 31.9% 27.4% (many diffs)
4 human 255928 SYT14 synaptotagmin 14 XM_017000933.2 31.9% 27.4% (many diffs)
5 human 255928 SYT14 synaptotagmin 14 XM_017000934.2 31.9% 27.4% (many diffs)
6 human 255928 SYT14 synaptotagmin 14 NM_153262.4 30.8% 26.4% (many diffs)
7 human 255928 SYT14 synaptotagmin 14 NM_001146262.3 29.8% 25.6% (many diffs)
8 human 255928 SYT14 synaptotagmin 14 NM_001146264.3 28.5% 24.5% (many diffs)
9 human 255928 SYT14 synaptotagmin 14 NM_001146261.2 27.6% 23.7% (many diffs)
10 human 401135 SYT14P1 synaptotagmin 14 pseudogene 1 NR_027094.1 21.4% 1_189del;276C>T;754_2628del
11 human 255928 SYT14 synaptotagmin 14 XM_017000931.1 20.2% 17.4% (many diffs)
12 human 255928 SYT14 synaptotagmin 14 XM_006711262.3 19.8% 17% (many diffs)
13 human 255928 SYT14 synaptotagmin 14 NR_027459.3 4.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
633
ORF length:
564
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttggagggc ttccagatct tggttcagaa tacagtacaa ggaacaattc
121acaagataaa atgtgtctgt gactcccaaa tgagtgtgtc agaaatgtct tgtagtgaaa
181gtacatccgc atgtcagtct ctcgaagacg ggtcagttcc agaaatTCTC ATTAGCCTGC
241TTTATAATGC CACAAATGGG AGACTATCAG CAGAAGTGAT AAAAGGCAGC CACTTAAAAA
301ATTGGGCAGC AAACAGACCA CCCAATACAT ATGTTAAGTT AACTCTACGG AAATCCACGG
361ATCAAGAGAT GTCCAAATGC AAGATATCCA TCCGCAGAGG GCGGCCAAAT CCAGTATACA
421AGGAAACTTT TGTTTTCAAA GTGACCCTAT TTCAGCTTTC TCATGTGACA CTCATGCTGT
481CTGTGTATAA CAAAAGCAGC ATGAGAAGAA AGATGATAGG CTGGATTTAT TTAGGTCTCA
541ACAGCTCTGG AGAAGAACTC AATCACTGGA CTGAAATGAA AGAGTCAAAA GGACGGCAAG
601TACGTAGATG GCAGGCGTTG CTAGAGTCAC GATTGCCAAC TTTCTTGTAC AAAGTGGTTG
661ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
721GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGT
781GACAGGGAAC AATCAAACCC AAACGCGTTA AGTCgacaat caacctctgg attacaaaat
841ttgtgaaaga tt

Download FASTA (ORF) (Full)

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