Construct: ORF TRCN0000481069

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017736.1_s317c1
Derived from:
ccsbBroadEn_13387
DNA Barcode:
TGTAAGCGTCCTCGCATTTACTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF385C (201181)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481069
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 201181 ZNF385C zinc finger protein 385C NM_001242704.1 40.9% 41% 1_750del;1245C>T
2 mouse 278304 Zfp385c zinc finger protein 385C XM_006533496.2 39.8% 39.2% (many diffs)
3 mouse 278304 Zfp385c zinc finger protein 385C NM_177790.4 35% 34.4% (many diffs)
4 mouse 278304 Zfp385c zinc finger protein 385C XM_011249062.1 35% 34.4% (many diffs)
5 mouse 278304 Zfp385c zinc finger protein 385C XM_006533494.3 34.9% 34.4% (many diffs)
6 mouse 278304 Zfp385c zinc finger protein 385C XM_017314581.1 29.5% 29% (many diffs)
7 mouse 278304 Zfp385c zinc finger protein 385C XM_006533488.3 29.4% 29% (many diffs)
8 mouse 278304 Zfp385c zinc finger protein 385C XM_006533492.3 29.4% 29% (many diffs)
9 mouse 278304 Zfp385c zinc finger protein 385C XM_006533495.2 29.4% 29% (many diffs)
10 mouse 278304 Zfp385c zinc finger protein 385C XM_017314583.1 28.6% 28.2% (many diffs)
11 mouse 278304 Zfp385c zinc finger protein 385C XM_017314582.1 28.6% 28.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
588
ORF length:
522
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga aggtcagcga ggggctcccc ggaggagccg gggccgcccg gtgtccaggg
121gaggtgccgg acacaaagcc aagagagtca cagggggccg gggcggccgg caggggccca
181gccctgCCTT CCACTGTGCT CTCTGTCAGC TCCAGGTCAA TTCAGAGACC CAACTGAAGC
241AGCACATGAG CAGCAGGAGG CACAAAGACC GCCTGGCCGG GAAGACCCCC AAGCCCTCCA
301GCCAGCACAG CAAGCTGCAG AAGCACGCAG CGCTGGCTGT GAGTATCCTC AAGTCTAAAC
361TGGCCTTGCA GAAGCAACTC ACCAAGACGT TGGCAGCCCG CTTCCTGCCC AGCCCGCTCC
421CCACCGCAGC CACTGCCATC TGTGCTCTGC CAGGGCCCCT GGCCCTCCGC CCTGCCCCTA
481CAGCAGCCAC TACCCTCTTC CCGGCTCCCA TCCTGGGCCC AGCTCTGTTT CGCACCCCAG
541CAGGAGCTGT CCGCCCTGCT ACAGGACCTA TCGTCCTTGC CCCTTATTAC CCAACTTTCT
601TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
661CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
721GTGGAAAGGA CGATGTAAGC GTCCTCGCAT TTACTGCACG CGTTAAGTCg acaatcaacc
781tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)