Construct: ORF TRCN0000481152

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003059.3_s317c1
Derived from:
ccsbBroadEn_14565
DNA Barcode:
TAATACCTAGCTTTCCAGTGCCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAMK2D (817)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481152
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 817 CAMK2D calcium/calmodulin dependen... NM_172115.2 100% 100%
2 human 817 CAMK2D calcium/calmodulin dependen... NM_172127.2 100% 100%
3 human 817 CAMK2D calcium/calmodulin dependen... NM_172128.3 99.9% 99.7% 1434C>G
4 human 817 CAMK2D calcium/calmodulin dependen... XM_017008678.2 99.7% 99.7% 943_944insCAG
5 human 817 CAMK2D calcium/calmodulin dependen... NM_001321576.2 99.7% 99.5% 943_944insCAG;1431C>G
6 human 817 CAMK2D calcium/calmodulin dependen... XM_006714330.3 98.4% 98.9% (many diffs)
7 human 817 CAMK2D calcium/calmodulin dependen... NM_172129.1 97.7% 97.7% 984_1016del
8 human 817 CAMK2D calcium/calmodulin dependen... XM_011532291.2 97.7% 97.7% 984_1016del
9 human 817 CAMK2D calcium/calmodulin dependen... NM_001321582.2 97.6% 97.5% 984_1016del;1467C>G
10 human 817 CAMK2D calcium/calmodulin dependen... NM_001321589.2 97.1% 97.1% 982_1023del
11 human 817 CAMK2D calcium/calmodulin dependen... NM_172114.1 97.1% 97.1% 982_1023del
12 human 817 CAMK2D calcium/calmodulin dependen... NM_001321590.2 97% 96.9% 982_1023del;1476C>G
13 human 817 CAMK2D calcium/calmodulin dependen... NM_001321584.2 96.8% 96.7% 943_944insCAG;979_1020del;1473C>G
14 human 817 CAMK2D calcium/calmodulin dependen... NM_001221.4 95.7% 95.7% 1435_1497del
15 human 817 CAMK2D calcium/calmodulin dependen... NM_001321583.2 95.6% 96.1% (many diffs)
16 human 817 CAMK2D calcium/calmodulin dependen... NM_001321575.2 95.6% 95.9% (many diffs)
17 human 817 CAMK2D calcium/calmodulin dependen... NM_001321574.2 95.5% 95.5% 943_944insCAG;1432_1494del
18 human 817 CAMK2D calcium/calmodulin dependen... XM_017008677.2 95.4% 95.9% (many diffs)
19 human 817 CAMK2D calcium/calmodulin dependen... NM_001321577.2 95.4% 95.7% (many diffs)
20 human 817 CAMK2D calcium/calmodulin dependen... NM_001321591.2 95% 95% 982_1056del
21 human 817 CAMK2D calcium/calmodulin dependen... NM_001321587.2 94.9% 94.8% 982_1056del;1509C>G
22 human 817 CAMK2D calcium/calmodulin dependen... XM_011532289.2 93.7% 93.7% 984_1016del;1468_1530del
23 human 817 CAMK2D calcium/calmodulin dependen... XM_011532290.2 93.5% 93.5% 943_944insCAG;981_1013del;1465_1527del
24 human 817 CAMK2D calcium/calmodulin dependen... NM_001321568.2 93.5% 93.8% (many diffs)
25 human 817 CAMK2D calcium/calmodulin dependen... NM_001321579.2 93.3% 93.3% 982_1083del
26 human 817 CAMK2D calcium/calmodulin dependen... NM_001321570.2 93.2% 93.1% 982_1083del;1536C>G
27 human 817 CAMK2D calcium/calmodulin dependen... NM_001321566.2 93.1% 93.1% 982_1023del;1477_1539del
28 human 817 CAMK2D calcium/calmodulin dependen... NM_001321586.2 93% 92.9% 943_944insCAG;979_1080del;1533C>G
29 human 817 CAMK2D calcium/calmodulin dependen... NM_001321588.2 92.9% 92.9% 943_944insCAG;979_1020del;1474_1536del
30 human 817 CAMK2D calcium/calmodulin dependen... XM_011532295.2 92.3% 92.7% (many diffs)
31 human 817 CAMK2D calcium/calmodulin dependen... NM_001321580.2 92.1% 92.1% 984_1043del;1495_1557del
32 human 817 CAMK2D calcium/calmodulin dependen... NM_001321567.2 91.9% 92.3% (many diffs)
33 human 817 CAMK2D calcium/calmodulin dependen... NM_001321572.2 91.8% 92.1% (many diffs)
34 human 817 CAMK2D calcium/calmodulin dependen... XM_017008672.2 91.7% 92.2% (many diffs)
35 human 817 CAMK2D calcium/calmodulin dependen... XM_017008674.2 91.6% 91.9% (many diffs)
36 human 817 CAMK2D calcium/calmodulin dependen... XM_017008673.2 91.5% 92% (many diffs)
37 human 817 CAMK2D calcium/calmodulin dependen... NM_001321573.2 91.2% 91.2% 982_1056del;1510_1572del
38 human 817 CAMK2D calcium/calmodulin dependen... NM_001321569.2 89.6% 89.6% 982_1083del;1537_1599del
39 human 817 CAMK2D calcium/calmodulin dependen... XM_005263253.4 89.4% 89.4% 943_944insCAG;979_1080del;1534_1596del
40 human 817 CAMK2D calcium/calmodulin dependen... NM_001321571.2 88.3% 88.7% (many diffs)
41 human 817 CAMK2D calcium/calmodulin dependen... XM_005263254.4 88.1% 88.5% (many diffs)
42 human 817 CAMK2D calcium/calmodulin dependen... NM_001321581.2 87.7% 86.5% (many diffs)
43 human 817 CAMK2D calcium/calmodulin dependen... XM_017008675.2 81.1% 80.1% (many diffs)
44 human 817 CAMK2D calcium/calmodulin dependen... XM_017008676.1 81.1% 80.1% (many diffs)
45 human 817 CAMK2D calcium/calmodulin dependen... XM_011532292.2 65% 65.1% (many diffs)
46 human 817 CAMK2D calcium/calmodulin dependen... NM_001321578.2 57.2% 57.1% 0_1ins588;394_435del;888C>G
47 human 817 CAMK2D calcium/calmodulin dependen... NM_001321585.2 57.2% 57.1% 0_1ins588;394_435del;888C>G
48 human 817 CAMK2D calcium/calmodulin dependen... NM_001321592.2 14% 12.3% (many diffs)
49 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_023813.4 91% 99.7% (many diffs)
50 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319421.1 89.8% 98.9% (many diffs)
51 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500829.3 89% 97.5% (many diffs)
52 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001293664.1 88.4% 96.9% (many diffs)
53 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500825.3 87.4% 95.7% (many diffs)
54 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001025438.2 87.3% 95.7% (many diffs)
55 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500826.3 87.1% 95.5% (many diffs)
56 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319422.1 86.2% 94.9% (many diffs)
57 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500823.3 85.4% 93.7% (many diffs)
58 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500824.3 85.2% 93.5% (many diffs)
59 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001293663.1 85% 93.1% (many diffs)
60 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500820.3 84.9% 93.1% (many diffs)
61 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319419.1 84.8% 92.9% (many diffs)
62 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500822.3 84.7% 92.9% (many diffs)
63 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319420.1 84.2% 92.7% (many diffs)
64 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500819.3 83.9% 92.1% (many diffs)
65 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001025439.2 83.8% 92.1% (many diffs)
66 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319416.1 83.7% 91.9% (many diffs)
67 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319417.1 83.7% 92.2% (many diffs)
68 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319418.1 83.5% 92% (many diffs)
69 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001346635.1 81.7% 89.6% (many diffs)
70 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500818.3 81.5% 89.4% (many diffs)
71 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001346636.1 80.5% 88.7% (many diffs)
72 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_017319415.1 80.3% 88.5% (many diffs)
73 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500833.3 71.9% 67.5% (many diffs)
74 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001293666.1 68% 72.3% (many diffs)
75 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500839.3 67.8% 71.9% (many diffs)
76 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500835.3 65.3% 69.4% (many diffs)
77 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500834.3 63.3% 67.1% (many diffs)
78 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500836.3 63% 69.5% (many diffs)
79 mouse 108058 Camk2d calcium/calmodulin-dependen... NM_001293665.1 62.4% 67.7% (many diffs)
80 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500831.3 59% 65.1% (many diffs)
81 mouse 108058 Camk2d calcium/calmodulin-dependen... XM_006500832.3 58.4% 63.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1500
ORF length:
1434
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ttcgaccaca acctgcacca ggttcacgga cgagtatcag cttttcgagg
121agcttggaaa gggggcattc tcagtggtga gaagatgtat gaaaattcct actggacaag
181aatatgctgc caaaattatc aacaccaaaa agctttctgc tagggatcat cagaaactag
241aaagagaagc tagaatctgc cgtcttttga agcaccctaa tattgtgcga cttcatgata
301gcatatcaga agagggcttt cactacttgg tgtttgattt agttactgga ggtgaactgt
361ttgaagacat agtggcaaga gaatactaca gtgaagctga tgccagtcat tgtatacagc
421agattctaga aagtgttaat cattgtcacc taaatggcat agttcacagg gacctgaagc
481ctgagaattt gcttttagct agcaaatcca agggagcagc tgtgaaattg gcagactttg
541gcttagccat agaagttcaa ggggaccagc aggcgtggtt tggttttgct ggcacacctg
601gatatctttc tccagaagtt ttacgtaaag atccttatgg aaagccagtg gatatgtggg
661catgtggtgt cattctctat attctacttg tggggtatcc acccttctgg gatgaagacc
721aacacagact ctatcagcag atcaaggctg gagcttatga ttttccatca ccagaatggg
781acacggtgac tcctgaagcc aaagacctca tcaataaaat gcttactatc aaccctgcca
841aacgcatcac agcctcagag gcactgaagc acccatggat ctgtcaacgt tctactgttg
901cttccatgat gcacagacag gagactgtag actgcttgaa gaaatttaat gctagaagaa
961aactaaaggg tgccatcttg acaactatgc tggctacaag gaatttctca gcagccaaga
1021gtttgttgaa gaaaccagat ggagtaaagg agTCAACTGA GAGTTCAAAT ACAACAATTG
1081AGGATGAAGA TGTGAAAGCA CGAAAGCAAG AGATTATCAA AGTCACTGAA CAACTGATCG
1141AAGCTATCAA CAATGGGGAC TTTGAAGCCT ACACAAAAAT CTGTGACCCA GGCCTTACTG
1201CTTTTGAACC TGAAGCTTTG GGTAATTTAG TGGAAGGGAT GGATTTTCAC CGATTCTACT
1261TTGAAAATGC TTTGTCCAAA AGCAATAAAC CAATCCACAC TATTATTCTA AACCCTCATG
1321TACATCTGGT AGGGGATGAT GCCGCCTGCA TAGCATATAT TAGGCTCACA CAGTACATGG
1381ATGGCAGTGG AATGCCAAAG ACAATGCAGT CAGAAGAGAC TCGTGTGTGG CACCGCCGGG
1441ATGGAAAGTG GCAGAATGTT CATTTTCATC GCTCGGGGTC ACCAACAGTA CCCATCAAGT
1501ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1561GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1621TTTATATATC TTGTGGAAAG GACGATAATA CCTAGCTTTC CAGTGCCAAA CGCGTTAAGT
1681Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)