Construct: ORF TRCN0000481364
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006186.1_s317c1
- Derived from:
- ccsbBroadEn_03984
- DNA Barcode:
- CACACGAACGTTTACTGCCGCCAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC30A5 (64924)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481364
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64924 | SLC30A5 | solute carrier family 30 me... | NM_024055.5 | 100% | 100% | |
| 2 | human | 64924 | SLC30A5 | solute carrier family 30 me... | NM_001251969.2 | 65.2% | 65.2% | 82_83ins123 |
| 3 | human | 64924 | SLC30A5 | solute carrier family 30 me... | XM_006714672.4 | 13.9% | 13% | (many diffs) |
| 4 | human | 64924 | SLC30A5 | solute carrier family 30 me... | NM_022902.5 | 13.2% | 12.3% | (many diffs) |
| 5 | mouse | 69048 | Slc30a5 | solute carrier family 30 (z... | NM_022885.2 | 12.3% | 11.1% | (many diffs) |
| 6 | mouse | 69048 | Slc30a5 | solute carrier family 30 (z... | XR_382742.3 | 8.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 444
- ORF length:
- 354
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGAGGAGAA ATACGGCGGG GACGTGCTGG 121 CCGGCCCCGG CGGCGGCGGC GGCCTTGGGC CGGTGGACGT ACCCAGCGCT CGATTAACAA 181 AATATATTGT GTTACTATGT TTCACTAAAT TTTTGAAGGC TGTGGGACTT TTCGAATCAT 241 ATGATCTCCT AAAAGCTGTT CACATTGTTC AGTTCATTTT TATATTAAAA CTTGGGACTG 301 CATTTTTTAT GGTTTTGTTT CAAAAGCCAT TTTCTTCTGG GAAAACTATT ACCAAACACC 361 AGATAATTGG ATCACTAAAA ATTCCTGGTA GAAAAGAATT TAAAGACAAA AAGTTAAATG 421 ATCCTAGGAA ACTAGTGGGA AACTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 481 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 541 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC ACACGAACGT 601 TTACTGCCGC CATACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 661 att