Construct: ORF TRCN0000488472

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021849.1_s317c1
DNA Barcode:
GACCCCTACTCCGCTAGGAGTACC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
TCF4 (6925)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488472
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6925 TCF4 transcription factor 4 NM_001369571.1 100% 100%
2 human 6925 TCF4 transcription factor 4 NM_001369572.1 100% 100%
3 human 6925 TCF4 transcription factor 4 NM_003199.3 100% 100%
4 human 6925 TCF4 transcription factor 4 NM_001369573.1 99.8% 99.8% 366_367insCAG
5 human 6925 TCF4 transcription factor 4 NM_001369574.1 99.8% 99.8% 1066_1067insCAG
6 human 6925 TCF4 transcription factor 4 NM_001083962.2 99.4% 99.4% 1634_1645del
7 human 6925 TCF4 transcription factor 4 NM_001369567.1 99.4% 99.4% 1634_1645del
8 human 6925 TCF4 transcription factor 4 NM_001369568.1 99.4% 99.4% 1634_1645del
9 human 6925 TCF4 transcription factor 4 NM_001330604.3 99.2% 99.2% 1066_1067insCAG;1631_1642del
10 human 6925 TCF4 transcription factor 4 NM_001369569.1 99.2% 99.2% 366_367insCAG;1631_1642del
11 human 6925 TCF4 transcription factor 4 NM_001369570.1 99.2% 99.2% 366_367insCAG;1631_1642del
12 human 6925 TCF4 transcription factor 4 NM_001243228.2 98.5% 98.5% 550_567del;1652_1663del
13 human 6925 TCF4 transcription factor 4 NM_001243230.1 96.9% 96.8% (many diffs)
14 human 6925 TCF4 transcription factor 4 NM_001306207.1 96.4% 96.4% 0_1ins72
15 human 6925 TCF4 transcription factor 4 NM_001348219.2 96.4% 96.4% 0_1ins72
16 human 6925 TCF4 transcription factor 4 NM_001369582.1 96.4% 96.4% 0_1ins72
17 human 6925 TCF4 transcription factor 4 NM_001369583.1 96.4% 96.4% 0_1ins72
18 human 6925 TCF4 transcription factor 4 NM_001348220.1 96.2% 96.2% 0_1ins72;294_295insCAG
19 human 6925 TCF4 transcription factor 4 NM_001369584.1 96.2% 96.2% 0_1ins72;294_295insCAG
20 human 6925 TCF4 transcription factor 4 NM_001369585.1 96.2% 96.2% 0_1ins72;294_295insCAG
21 human 6925 TCF4 transcription factor 4 XM_017025950.2 96.1% 96.1% 0_1ins72;294_295insCAG;991_992insCAG
22 human 6925 TCF4 transcription factor 4 NM_001243227.2 95.8% 95.8% 0_1ins72;1562_1573del
23 human 6925 TCF4 transcription factor 4 NM_001348217.1 95.8% 95.8% 0_1ins72;1562_1573del
24 human 6925 TCF4 transcription factor 4 NM_001348218.2 95.8% 95.8% 0_1ins72;1562_1573del
25 human 6925 TCF4 transcription factor 4 NM_001369575.1 95.8% 95.8% 0_1ins72;1562_1573del
26 human 6925 TCF4 transcription factor 4 NM_001369586.1 95.6% 95.5% 0_1ins72;998_1000delGTA;1565_1576del
27 human 6925 TCF4 transcription factor 4 NM_001369576.1 95.6% 95.6% 0_1ins72;294_295insCAG;1559_1570del
28 human 6925 TCF4 transcription factor 4 NM_001369577.1 95.6% 95.6% 0_1ins72;994_995insCAG;1559_1570del
29 human 6925 TCF4 transcription factor 4 NM_001369578.1 95.6% 95.6% 0_1ins72;294_295insCAG;1559_1570del
30 human 6925 TCF4 transcription factor 4 NM_001369579.1 95.6% 95.6% 0_1ins72;994_995insCAG;1559_1570del
31 human 6925 TCF4 transcription factor 4 NM_001369580.1 95.6% 95.6% 0_1ins72;994_995insCAG;1559_1570del
32 human 6925 TCF4 transcription factor 4 NM_001369581.1 95.6% 95.6% 0_1ins72;294_295insCAG;1559_1570del
33 human 6925 TCF4 transcription factor 4 XM_006722538.3 95.6% 95.6% 0_1ins72;294_295insCAG;1559_1570del
34 human 6925 TCF4 transcription factor 4 NM_001243231.2 93.5% 92.6% (many diffs)
35 human 6925 TCF4 transcription factor 4 NM_001348211.2 92.9% 92.1% (many diffs)
36 human 6925 TCF4 transcription factor 4 XM_017025951.2 92.7% 91.9% (many diffs)
37 human 6925 TCF4 transcription factor 4 XM_024451241.1 87.6% 87.6% 0_1ins237;1397_1408del
38 human 6925 TCF4 transcription factor 4 XM_017025953.2 86.7% 82.8% (many diffs)
39 human 6925 TCF4 transcription factor 4 NM_001306208.1 86.5% 82.7% (many diffs)
40 human 6925 TCF4 transcription factor 4 NM_001243226.3 86.2% 86.2% 1_306del;1940_1951del
41 human 6925 TCF4 transcription factor 4 XM_005266749.4 86.1% 82.4% (many diffs)
42 human 6925 TCF4 transcription factor 4 NM_001243232.1 86% 82.2% (many diffs)
43 human 6925 TCF4 transcription factor 4 XM_017025952.2 85.9% 82.1% (many diffs)
44 human 6925 TCF4 transcription factor 4 NM_001243233.2 80.5% 80.5% 0_1ins390
45 human 6925 TCF4 transcription factor 4 NM_001348212.2 80.5% 80.5% 0_1ins390
46 human 6925 TCF4 transcription factor 4 XM_017025956.2 80.5% 80.5% 0_1ins390
47 human 6925 TCF4 transcription factor 4 NM_001330605.3 80% 80% 0_1ins390;1244_1255del
48 human 6925 TCF4 transcription factor 4 NM_001348213.2 80% 80% 0_1ins390;1244_1255del
49 human 6925 TCF4 transcription factor 4 XM_005266752.5 80% 80% 0_1ins390;1244_1255del
50 human 6925 TCF4 transcription factor 4 XM_005266755.5 80% 80% 0_1ins390;1244_1255del
51 human 6925 TCF4 transcription factor 4 XM_017025954.2 79.8% 79.8% 0_1ins390;676_677insCAG;1241_1252del
52 human 6925 TCF4 transcription factor 4 NM_001243236.2 75.1% 72.4% (many diffs)
53 human 6925 TCF4 transcription factor 4 NM_001348216.2 74.7% 71.9% (many diffs)
54 human 6925 TCF4 transcription factor 4 NM_001243235.2 74.3% 71.7% (many diffs)
55 human 6925 TCF4 transcription factor 4 NM_001348214.2 74.2% 71.6% (many diffs)
56 human 6925 TCF4 transcription factor 4 NM_001243234.2 73.9% 71.3% (many diffs)
57 human 6925 TCF4 transcription factor 4 XM_005266761.4 73.7% 71.2% (many diffs)
58 human 6925 TCF4 transcription factor 4 NM_001348215.2 67.2% 67.2% 0_1ins648;986_997del
59 mouse 21413 Tcf4 transcription factor 4 NM_001083967.1 92.5% 98% (many diffs)
60 mouse 21413 Tcf4 transcription factor 4 XM_006525750.3 92.5% 98% (many diffs)
61 mouse 21413 Tcf4 transcription factor 4 XM_017317857.1 92.5% 98% (many diffs)
62 mouse 21413 Tcf4 transcription factor 4 XM_006525751.3 92.3% 97.9% (many diffs)
63 mouse 21413 Tcf4 transcription factor 4 XM_006525752.3 92.3% 97.9% (many diffs)
64 mouse 21413 Tcf4 transcription factor 4 XM_017317858.1 92.2% 97.7% (many diffs)
65 mouse 21413 Tcf4 transcription factor 4 NM_013685.2 91.9% 97.4% (many diffs)
66 mouse 21413 Tcf4 transcription factor 4 XM_006525746.3 91.9% 97.4% (many diffs)
67 mouse 21413 Tcf4 transcription factor 4 XM_006525747.3 91.9% 97.4% (many diffs)
68 mouse 21413 Tcf4 transcription factor 4 XM_006525748.3 91.8% 97.3% (many diffs)
69 mouse 21413 Tcf4 transcription factor 4 XM_006525749.3 91.8% 97.3% (many diffs)
70 mouse 21413 Tcf4 transcription factor 4 XM_017317854.1 91.8% 97.3% (many diffs)
71 mouse 21413 Tcf4 transcription factor 4 XM_017317855.1 91.8% 97.3% (many diffs)
72 mouse 21413 Tcf4 transcription factor 4 XM_017317856.1 91.6% 97.1% (many diffs)
73 mouse 21413 Tcf4 transcription factor 4 XM_006525753.3 88.3% 93.8% (many diffs)
74 mouse 21413 Tcf4 transcription factor 4 XM_017317859.1 88.2% 93.7% (many diffs)
75 mouse 21413 Tcf4 transcription factor 4 XM_017317861.1 73.8% 79% (many diffs)
76 mouse 21413 Tcf4 transcription factor 4 XM_006525757.3 73.3% 78.5% (many diffs)
77 mouse 21413 Tcf4 transcription factor 4 XM_006525759.3 73.3% 78.5% (many diffs)
78 mouse 21413 Tcf4 transcription factor 4 XM_017317860.1 73.3% 78.5% (many diffs)
79 mouse 21413 Tcf4 transcription factor 4 XM_017317863.1 73.3% 78.5% (many diffs)
80 mouse 21413 Tcf4 transcription factor 4 XM_006525762.3 68.9% 70.4% (many diffs)
81 mouse 21413 Tcf4 transcription factor 4 XM_006525760.3 68.4% 70% (many diffs)
82 mouse 21413 Tcf4 transcription factor 4 XM_006525766.3 68.3% 69.8% (many diffs)
83 mouse 21413 Tcf4 transcription factor 4 XM_006525763.3 68.2% 71% (many diffs)
84 mouse 21413 Tcf4 transcription factor 4 XM_006525761.3 67.8% 70.6% (many diffs)
85 mouse 21413 Tcf4 transcription factor 4 XM_017317862.1 61.6% 66.4% (many diffs)
86 mouse 21413 Tcf4 transcription factor 4 XM_006525764.3 61.3% 66% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2070
ORF length:
2001
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gcatcaccaa cagcgaatgg ctgccttagg gacggacaaa gagctgagtg
121atttactgga tttcagtgcg atgttttcac ctcctgtgag cagtgggaaa aatggaccaa
181cttctttggc aagtggacat tttactggct caaatgtaga agacagaagt agctcagggt
241cctgggggaa tggaggacat ccaagcccgt ccaggaacta tggagatggg actccctatg
301accacatgac cagcagggac cttgggtcac atgacaatct ctctccacct tttgtcaatt
361ccagaataca aagtaaaaca gaaaggggct catactcatc ttatgggaga gaatcaaact
421tacagggttg ccaccagcag agtctccttg gaggtgacat ggatatgggc aacccaggaa
481ccctttcgcc caccaaacct ggttcccagt actatcagta ttctagcaat aatccccgaa
541ggaggcctct tcacagtagt gccatggagg tacagacaaa gaaagttcga aaagttcctc
601caggtttgcc atcttcagtc tatgctccat cagcaagcac tgccgactac aatagggact
661cgccaggcta tccttcctcc aaaccagcaa ccagcacttt ccctagctcc ttcttcatgc
721aagatggcca tcacagcagt gacccttgga gctcctccag tgggatgaat cagcctggct
781atgcaggaat gttgggcaac tcttctcata ttccacagtc cagcagctac tgtagcctgc
841atccacatga acgtttgagc tatccatcac actcctcagc agacatcaat tccagtcttc
901ctccgatgtc cactttccat cgtagtggta caaaccatta cagcacctct tcctgtacgc
961ctcctgccaa cgggacagac agtataatgg caaatagagg aagcggggca gccggcagct
1021cccagactgg agatgctctg gggaaagcac ttgcttcgat ctattctcca gatcacacta
1081acaacagctt ttcatcaaac ccttcaactc ctgttggctc tcctccatct ctctcagcag
1141gcacagctgt ttggtctaga aatggaggac aggcctcatc gtctcctaat tatgaaggac
1201ccttacactc tttgcaaagc cgaattgaag atcgtttaga aagactggat gatgctattc
1261atgttctccg gaaccatgca gtgggcccat ccacagctat gcctggtggt catggggaca
1321tgcatggaat cattggacct tctcataatg gagccatggg tggtctgggc tcagggtatg
1381gaaccggcct tctttcagcc aacagacatt cactcatggt ggggacccat cgtgaagatg
1441gcgtggccct gagaggcagc cattctcttc tgccaaacca ggttccggtt ccacagcttc
1501ctgtccagtc tgcgacttcc cctgacctga acccacccca ggacccttac agaggcatgc
1561caccaggact acaggggcag agtgtctcct ctggcagctc tgagatcaaa tccgatgacg
1621agggtgatga gaacctgcaa gacacgaaat cttcggagga caagaaatta gatgacgaca
1681agaaggatat caaatcaatt actagcaata atgacgatga ggacctgaca ccagagcaga
1741aggcagagcg tgagaaggag cggaggatgg ccaacaatgc ccGAGAGCGT CTGCGGGTCC
1801GTGACATCAA CGAGGCTTTC AAAGAGCTCG GCCGCATGGT GCAGCTCCAC CTCAAGAGTG
1861ACAAGCCCCA GACCAAGCTC CTGATCCTCC ACCAGGCGGT GGCCGTCATC CTCAGTCTGG
1921AGCAGCAAGT CCGAGAAAGG AATCTGAATC CGAAAGCTGC GTGTCTGAAA AGAAGGGAGG
1981AAGAGAAGGT GTCCTCAGAG CCTCCCCCTC TCTCCTTGGC CGGCCCACAC CCTGGAATGG
2041GAGACGCATC GAATCACATG GGACAGATGT AAGACCCAGC TTTCTTGTAC AAAGTGGTTG
2101ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
2161GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA
2221CCCCTACTCC GCTAGGAGTA CCACGCGTTA AGTCgacaat caacctctgg attacaaaat
2281ttgtgaaaga tt

Download FASTA (ORF) (Full)