Transcript: Human XM_011539542.2

PREDICTED: Homo sapiens sortilin related VPS10 domain containing receptor 3 (SORCS3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SORCS3 (22986)
Length:
4515
CDS:
47..2647

Additional Resources:

NCBI RefSeq record:
XM_011539542.2
NBCI Gene record:
SORCS3 (22986)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011539542.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000063232 GCAGGTATCAAAGGGATATTT pLKO.1 464 CDS 100% 15.000 21.000 N SORCS3 n/a
2 TRCN0000426432 ACAGACGAGAACCAAGTATTT pLKO_005 299 CDS 100% 13.200 18.480 N SORCS3 n/a
3 TRCN0000063228 GCCAGCTACTACGTGTCTTAT pLKO.1 209 CDS 100% 13.200 18.480 N SORCS3 n/a
4 TRCN0000174509 CCAGGATGAATATATCTTCAT pLKO.1 166 CDS 100% 0.495 0.693 N Sorcs3 n/a
5 TRCN0000415397 AGCTCTCATATACTGATATTG pLKO_005 726 CDS 100% 13.200 9.240 N SORCS3 n/a
6 TRCN0000426648 CTCTGCCATTGGTAGCTTAAA pLKO_005 2899 3UTR 100% 13.200 9.240 N SORCS3 n/a
7 TRCN0000063230 GCACAATGCAACTTTCATCAT pLKO.1 1492 CDS 100% 4.950 3.465 N SORCS3 n/a
8 TRCN0000063231 CCGAGTTCCATTTGTTGCCAT pLKO.1 1735 CDS 100% 2.640 1.848 N SORCS3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011539542.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488612 GTGGATCTCCCCGGTCACGTTGGC pLX_317 8.2% 70.8% 70.8% V5 0_1ins1068;300C>T n/a
2 TRCN0000491737 TACACAACTTACAGCATTCAAGTC pLX_317 7.2% 70.8% 70.8% V5 (not translated due to prior stop codon) 0_1ins1068;300C>T n/a
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