Construct: ORF TRCN0000488800

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021066.1_s317c1
DNA Barcode:
CTAACTCGTCTTCGGTTCTGTGCC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
GRM1 (2911)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488800
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2911 GRM1 glutamate metabotropic rece... NM_001278064.2 99.9% 100% 3168T>G
2 human 2911 GRM1 glutamate metabotropic rece... XM_011535782.1 99.9% 100% 3168T>G
3 human 2911 GRM1 glutamate metabotropic rece... XM_017010783.1 99.9% 100% 3168T>G
4 human 2911 GRM1 glutamate metabotropic rece... XM_017010784.1 99.9% 100% 3168T>G
5 human 2911 GRM1 glutamate metabotropic rece... NM_001278067.1 76% 74.6% 2660_2661ins35;2724_2725ins823
6 human 2911 GRM1 glutamate metabotropic rece... NM_001278065.2 74.9% 74.7% (many diffs)
7 human 2911 GRM1 glutamate metabotropic rece... NM_001278066.1 74.9% 74.7% (many diffs)
8 human 2911 GRM1 glutamate metabotropic rece... XM_017010785.1 74.9% 74.7% (many diffs)
9 human 2911 GRM1 glutamate metabotropic rece... XM_017010786.1 74.9% 74.7% (many diffs)
10 human 2911 GRM1 glutamate metabotropic rece... XM_017010787.1 74.9% 74.7% (many diffs)
11 human 2911 GRM1 glutamate metabotropic rece... XM_024446412.1 74.9% 74.7% (many diffs)
12 human 2911 GRM1 glutamate metabotropic rece... XM_017010788.1 65.7% 65.7% 0_1ins1227;1941T>G
13 mouse 14816 Grm1 glutamate receptor, metabot... NM_016976.3 87.4% 94% (many diffs)
14 mouse 14816 Grm1 glutamate receptor, metabot... XM_006512549.3 87.4% 94% (many diffs)
15 mouse 14816 Grm1 glutamate receptor, metabot... XM_006512550.3 69.7% 74.7% (many diffs)
16 mouse 14816 Grm1 glutamate receptor, metabot... XM_006512551.3 67.3% 71.7% (many diffs)
17 mouse 14816 Grm1 glutamate receptor, metabot... NM_001114333.2 66.9% 72.8% (many diffs)
18 mouse 14816 Grm1 glutamate receptor, metabot... XM_006512554.3 57.1% 60.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
3654
ORF length:
3582
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggtcggg ctccttttgt tttttttccc agcgatcttt ttggaggtgt
121cccttctccc cagaagcccc ggcaggaaag tgttgctggc aggagcgtcg tctcagcgct
181cggtggccag aatggacgga gatgtcatca ttggagccct cttctcagtc catcaccagc
241ctccggccga gaaagtgccc gagaggaagt gtggggagat cagggagcag tatggcatcc
301agagggtgga ggccatgttc cacacgttgg ataagatcaa cgcggacccg gtcctcctgc
361ccaacatcac cctgggcagt gagatccggg actcctgctg gcactcttcc gtggctctgg
421aacagagcat tgagttcatt agggactctc tgatttccat tcgagatgag aaggatggga
481tcaaccggtg tctgcctgac ggccagtccc tccccccagg caggactaag aagcccattg
541cgggagtgat cggtcccggc tccagctctg tagccattca agtgcagaac ctgctccagc
601tcttcgacat cccccagatc gcttattcag ccacaagcat cgacctgagt gacaaaactt
661tgtacaaata cttcctgagg gttgtccctt ctgacacttt gcaggcaagg gccatgcttg
721acatagtcaa acgttacaat tggacctatg tctctgcagt ccacacggaa gggaattatg
781gggagagcgg aatggacgct ttcaaagagc tggctgccca ggaaggcctc tgtatcgccc
841attctgacaa aatctacagc aacgctgggg agaagagctt tgaccgactc ttgcgcaaac
901tccgagagag gcttcccaag gctagagtgg tggtctgctt ctgtgaaggc atgacagtgc
961gaggactcct gagcgccatg cggcgccttg gcgtcgtggg cgagttctca ctcattggaa
1021gtgatggatg ggcagacaga gatgaagtca ttgaaggtta tgaggtggaa gccaacgggg
1081gaatcacgat aaagctgcag tctccagagg tcaggtcatt tgatgattat ttcctgaaac
1141tgaggctgga cactaacacg aggaatccct ggttccctga gttctggcaa catcggttcc
1201agtgccgcct tccaggacac cttctggaaa atcccaactt taaacgaatc tgcacaggca
1261atgaaagctt agaagaaaac tatgtccagg acagtaagat ggggtttgtc atcaatgcca
1321tctatgccat ggcacatggg ctgcagaaca tgcaccatgc cctctgccct ggccacgtgg
1381gcctctgcga tgccatgaag cccatcgacg gcagcaagct gctggacttc ctcatcaagt
1441cctcattcat tggagtatct ggagaggagg tgtggtttga tgagaaagga gacgctcctg
1501gaaggtatga tatcatgaat ctgcagtaca ctgaagctaa tcgctatgac tatgtgcacg
1561ttggaacctg gcatgaagga gtgctgaaca ttgatgatta caaaatccag atgaacaaga
1621gtggagtggt gcggtctgtg tgcagtgagc cttgcttaaa gggccagatt aaggttatac
1681ggaaaggaga agtgagctgc tgctggattt gcacggcctg caaagagaat gaatatgtgc
1741aagatgagtt cacctgcaaa gcttgtgact tgggatggtg gcccaatgca gatctaacag
1801gctgtgagcc cattcctgtg cgctatcttg agtggagcaa catcgaatcc attatagcca
1861tcgccttttc atgcctggga atccttgtta ccttgtttgt caccctaatc tttgtactgt
1921accgggacac accagtggtc aaatcctcca gtcgggagct ctgctacatc atcctagctg
1981gcatcttcct tggttatgtg tgcccattca ctctcattgc caaacctact accacctcct
2041gctacctcca gcgcctcttg gttggcctct cctctgcgat gtgctactct gctttagtga
2101ctaaaaccaa tcgtattgca cgcatcctgg ctggcagcaa gaagaagatc tgcacccgga
2161agcccaggtt catgagtgcc tgggctcagg tgatcattgc ctcaattctg attagtgtgc
2221aactaaccct ggtggtaacc ctgatcatca tggaaccccc tatgcccatt ctgtcctacc
2281caagtatcaa ggaagtctac cttatctgca ataccagcaa cctgggtgtg gtggcccctt
2341tgggctacaa tggactcctc atcatgagct gtacctacta tgccttcaag acccgcaacg
2401tgcccgccaa cttcaacgag gccaaatata tcgcgttcac catgtacacc acctgtatca
2461tctggctagc ttttgtgccc atttactttg ggagcaacta caagatcatc acaacttgct
2521ttgcagtgag tctcagtgta acagtggctc tggggtgcat gttcactccc aagatgtaca
2581tcattattgc caagcctgag aggaatgtcc gcagtgcctt caccacctct gatgttgtcc
2641gcatgcatgt tggcgatggc aagctgccct gccgctccaa cactttcctc aacatcttcc
2701gaagaaagaa ggcaggggca gggaatgcca attctaatgg caagtctgtg tcatggtctg
2761aaccaggtgg aggacaggtg cccaagggac agcatatgtg gcaccgcctc tctgtgcacg
2821tgaagaccaa tgagacggcc tgcaaccaaa cagccgtcat caagcccctc actaaaagtt
2881accaaggctc tggcaagagc ctgacctttt cagataccag caccaagacc ctttacaacg
2941tagaggagga ggaggatgcc cagccgattc gctttagccc gcctggtagc ccttccatgg
3001tggtgcacag gcgcgtgcca agcgcggcga ccactccgcc tctgccgtcc cacctgaccg
3061cagaggagac ccccctcttc ctggccgaac cagccctccc caagggcttg ccccctcctc
3121tccagcagca gcagcaaccc cctccacagc agaaatcgct gatggaccag ctccagggag
3181tggtcagcaa cttcagtacc gcgatcccgg attttcacgc ggtgctggca ggccccgggg
3241gtcccgggaa cgggctgcgg tccctgtacc cgcccccgcc acctccgcag cacctgcaga
3301tgctgccgct gcagctgagc acctttgggg aggagctggt ctccccgccc gcggacgacg
3361acgacgacag cgagaggttt aagctccTCC AGGAGTACGT GTATGAGCAC GAGCGGGAAG
3421GGAACACGGA AGAAGACGAA CTGGAAGAGG AGGAGGAGGA CCTGCAGGCG GCCAGCAAAC
3481TGACCCCGGA TGATTCGCCT GCGCTGACGC CTCCGTCGCC TTTCCGCGAC TCGGTGGCCT
3541CGGGCAGCTC GGTGCCCAGC TCCCCCGTGT CCGAGTCGGT GCTCTGCACC CCTCCCAACG
3601TATCCTACGC CTCTGTCATT CTGCGGGACT ACAAGCAAAG CTCTTCCACC CTGTAAGACC
3661CAGCTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
3721TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
3781ATATATCTTG TGGAAAGGAC GACTAACTCG TCTTCGGTTC TGTGCCACGC GTTAAGTCga
3841caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)

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