Construct: ORF TRCN0000488897

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020647.1_s317c1
DNA Barcode:
CTGCGATCTAATACCCTCCTTAAG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
ERBB4 (2066)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488897
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2066 ERBB4 erb-b2 receptor tyrosine ki... NM_005235.3 100% 100%
2 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_006712364.3 98.8% 98.8% 1871_1915del
3 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_005246376.3 98.8% 98.5% (many diffs)
4 human 2066 ERBB4 erb-b2 receptor tyrosine ki... NM_001042599.1 98.7% 98.7% 3135_3136ins48
5 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_017003578.2 98% 98% 557_634del
6 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_005246377.3 97.6% 97.3% (many diffs)
7 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_017003577.2 96.9% 96.9% 557_634del;1949_1993del
8 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_017003580.2 96.9% 96.6% (many diffs)
9 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_017003581.2 96.8% 96.8% 557_634del;3213_3214ins48
10 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_017003579.2 95.7% 95.7% 557_634del;1949_1993del;3258_3259ins48
11 human 2066 ERBB4 erb-b2 receptor tyrosine ki... XM_017003582.1 83.1% 83.1% 1_1delAins622;1250_1294del
12 mouse 13869 Erbb4 erb-b2 receptor tyrosine ki... XM_006495692.3 90% 97.3% (many diffs)
13 mouse 13869 Erbb4 erb-b2 receptor tyrosine ki... XM_006495693.3 88.9% 95.9% (many diffs)
14 mouse 13869 Erbb4 erb-b2 receptor tyrosine ki... NM_010154.2 88.8% 96.1% (many diffs)
15 mouse 13869 Erbb4 erb-b2 receptor tyrosine ki... XM_006495694.3 87.7% 94.7% (many diffs)
16 mouse 13869 Erbb4 erb-b2 receptor tyrosine ki... XM_006495695.3 57.5% 62.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
99
ORF end:
4023
ORF length:
3924
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggctccgc ggccgccccc ttcaccgtcg accaaaaaat gaagccggcg acaggacttt
121gggtctgggt gagccttctc gtggcggcgg ggaccgtcca gcccagcgat tctcagtcag
181tgtgtgcagg aacggagaat aaactgagct ctctctctga cctggaacag cagtaccgag
241ccttgcgcaa gtactatgaa aactgtgagg ttgtcatggg caacctggag ataaccagca
301ttgagcacaa ccgggacctc tccttcctgc ggtctgttcg agaagtcaca ggctacgtgt
361tagtggctct taatcagttt cgttacctgc ctctggagaa tttacgcatt attcgtggga
421caaaacttta tgaggatcga tatgccttgg caatattttt aaactacaga aaagatggaa
481actttggact tcaagaactt ggattaaaga acttgacaga aatcctaaat ggtggagtct
541atgtagacca gaacaaattc ctttgttatg cagacaccat tcattggcaa gatattgttc
601ggaacccatg gccttccaac ttgactcttg tgtcaacaaa tggtagttca ggatgtggac
661gttgccataa gtcctgtact ggccgttgct ggggacccac agaaaatcat tgccagactt
721tgacaaggac ggtgtgtgca gaacaatgtg acggcagatg ctacggacct tacgtcagtg
781actgctgcca tcgagaatgt gctggaggct gctcaggacc taaggacaca gactgctttg
841cctgcatgaa tttcaatgac agtggagcat gtgttactca gtgtccccaa acctttgtct
901acaatccaac cacctttcaa ctggagcaca atttcaatgc aaagtacaca tatggagcat
961tctgtgtcaa gaaatgtcca cataactttg tggtagattc cagttcttgt gtgcgtgcct
1021gccctagttc caagatggaa gtagaagaaa atgggattaa aatgtgtaaa ccttgcactg
1081acatttgccc aaaagcttgt gatggcattg gcacaggatc attgatgtca gctcagactg
1141tggattccag taacattgac aaattcataa actgtaccaa gatcaatggg aatttgatct
1201ttctagtcac tggtattcat ggggaccctt acaatgcaat tgaagccata gacccagaga
1261aactgaacgt ctttcggaca gtcagagaga taacaggttt cctgaacata cagtcatggc
1321caccaaacat gactgacttc agtgtttttt ctaacctggt gaccattggt ggaagagtac
1381tctatagtgg cctgtccttg cttatcctca agcaacaggg catcacctct ctacagttcc
1441agtccctgaa ggaaatcagc gcaggaaaca tctatattac tgacaacagc aacctgtgtt
1501attatcatac cattaactgg acaacactct tcagcacaat caaccagaga atagtaatcc
1561gggacaacag aaaagctgaa aattgtactg ctgaaggaat ggtgtgcaac catctgtgtt
1621ccagtgatgg ctgttgggga cctgggccag accaatgtct gtcgtgtcgc cgcttcagta
1681gaggaaggat ctgcatagag tcttgtaacc tctatgatgg tgaatttcgg gagtttgaga
1741atggctccat ctgtgtggag tgtgaccccc agtgtgagaa gatggaagat ggcctcctca
1801catgccatgg accgggtcct gacaactgta caaagtgctc tcattttaaa gatggcccaa
1861actgtgtgga aaaatgtcca gatggcttac agggggcaaa cagtttcatt ttcaagtatg
1921ctgatccaga tcgggagtgc cacccatgcc atccaaactg cacccaaggg tgtaacggtc
1981ccactagtca tgactgcatt tactacccat ggacgggcca ttccacttta ccacaacatg
2041ctagaactcc cctgattgca gctggagtaa ttggtgggct cttcattctg gtcattgtgg
2101gtctgacatt tgctgtttat gttagaagga agagcatcaa aaagaaaaga gccttgagaa
2161gattcttgga aacagagttg gtggaaccat taactcccag tggcacagca cccaatcaag
2221ctcaacttcg tattttgaaa gaaactgagc tgaagagggt aaaagtcctt ggctcaggtg
2281cttttggaac ggtttataaa ggtatttggg tacctgaagg agaaactgtg aagattcctg
2341tggctattaa gattcttaat gagacaactg gtcccaaggc aaatgtggag ttcatggatg
2401aagctctgat catggcaagt atggatcatc cacacctagt ccggttgctg ggtgtgtgtc
2461tgagcccaac catccagctg gttactcaac ttatgcccca tggctgcctg ttggagtatg
2521tccacgagca caaggataac attggatcac aactgctgct taactggtgt gtccagatag
2581ctaagggaat gatgtacctg gaagaaagac gactcgttca tcgggatttg gcagcccgta
2641atgtcttagt gaaatctcca aaccatgtga aaatcacaga ttttgggcta gccagactct
2701tggaaggaga tgaaaaagag tacaatgctg atggaggaaa gatgccaatt aaatggatgg
2761ctctggagtg tatacattac aggaaattca cccatcagag tgacgtttgg agctatggag
2821ttactatatg ggaactgatg acctttggag gaaaacccta tgatggaatt ccaacgcgag
2881aaatccctga tttattagag aaaggagaac gtttgcctca gcctcccatc tgcactattg
2941acgtttacat ggtcatggtc aaatgttgga tgattgatgc tgacagtaga cctaaattta
3001aggaactggc tgctgagttt tcaaggatgg ctcgagaccc tcaaagatac ctagttattc
3061agggtgatga tcgtatgaag cttcccagtc caaatgacag caagttcttt cagaatctct
3121tggatgaaga ggatttggaa gatatgatgg atgctgagga gtacttggtc cctcaggctt
3181tcaacatccc acctcccatc tatacttcca gagcaagaat tgactcgaat aggagtgaaa
3241ttggacacag ccctcctcct gcctacaccc ccatgtcagg aaaccagttt gtataccgag
3301atggaggttt tgctgctgaa caaggagtgt ctgtgcccta cagagcccca actagcacaa
3361ttccagaagc tcctgtggca cagggtgcta ctgctgagat ttttgatgac tcctgctgta
3421atggcaccct acgcaagcca gtggcacccc atgtccaaga ggacagtagc acccagaggt
3481acagtgctga ccccaccgtg tttgccccag aacggagccc acgaggagag ctggatgagg
3541aaggttacat gactcctatg cgagacaaac ccaaacaaga atacctgaat ccagtggagg
3601agaacccttt tgtttctcgg agaaaaaatg gagaccttca agcattggat aatcccgaat
3661atcacaatgc atccaatggt ccacccaagg ccgaggatga gtatgtGAAT GAGCCACTGT
3721ACCTCAACAC CTTTGCCAAC ACCTTGGGAA AAGCTGAGTA CCTGAAGAAC AACATACTGT
3781CAATGCCAGA GAAGGCCAAG AAAGCGTTTG ACAACCCTGA CTACTGGAAC CACAGCCTGC
3841CACCTCGGAG CACCCTTCAG CACCCAGACT ACCTGCAGGA GTACAGCACA AAATATTTTT
3901ATAAACAGAA TGGGCGGATC CGGCCTATTG TGGCAGAGAA TCCTGAATAC CTCTCTGAGT
3961TCTCCCTGAA GCCAGGCACT GTGCTGCCGC CTCCACCTTA CAGACACCGG AATACTGTGG
4021TGTAAAGATC TAAGGGTGGG CGCGCCGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG
4081GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
4141AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACTGCGATC
4201TAATACCCTC CTTAAGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
4261aagatt

Download FASTA (ORF) (Full)

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