Transcript: Mouse NM_010154.2

Mus musculus erb-b2 receptor tyrosine kinase 4 (Erbb4), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Erbb4 (13869)
Length:
12037
CDS:
304..4182

Additional Resources:

NCBI RefSeq record:
NM_010154.2
NBCI Gene record:
Erbb4 (13869)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010154.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360691 TGTAAGCCTTGCACCGATATT pLKO_005 1270 CDS 100% 13.200 18.480 N Erbb4 n/a
2 TRCN0000023625 CGAGCCTTGCGCAAATACTAT pLKO.1 442 CDS 100% 5.625 7.875 N Gm642 n/a
3 TRCN0000023397 CGTCACTATATGGGAACTGAT pLKO.1 3024 CDS 100% 4.950 6.930 N LOC241079 n/a
4 TRCN0000023394 GCCCGCAATGTCTTAGTGAAA pLKO.1 2839 CDS 100% 4.950 6.930 N LOC241079 n/a
5 TRCN0000360689 GTACCGAGCCTTGCGCAAATA pLKO_005 438 CDS 100% 0.000 0.000 N Erbb4 n/a
6 TRCN0000360621 GAGAATAGTGATCCGAGATAA pLKO_005 1752 CDS 100% 13.200 10.560 N Erbb4 n/a
7 TRCN0000360692 GAGCTATGGCGTCACTATATG pLKO_005 3015 CDS 100% 13.200 10.560 N Erbb4 n/a
8 TRCN0000023404 CCAGAACAAATTCCTATGTTA pLKO.1 753 CDS 100% 5.625 4.500 N Erbb4 n/a
9 TRCN0000023407 GCAACCTGTGTTATTACCATA pLKO.1 1694 CDS 100% 4.950 3.960 N Erbb4 n/a
10 TRCN0000023626 GATCACCAGCATCGAGCACAA pLKO.1 495 CDS 100% 4.050 3.240 N Gm642 n/a
11 TRCN0000314630 CTGGAGAATTTACGCATTATT pLKO_005 598 CDS 100% 15.000 10.500 N ERBB4 n/a
12 TRCN0000023395 CCCTCAAAGATACCTAGTTAT pLKO.1 3243 CDS 100% 13.200 9.240 N LOC241079 n/a
13 TRCN0000023459 CCTCAACCAGTTTCGTTACTT pLKO.1 573 CDS 100% 5.625 3.938 N Gm1295 n/a
14 TRCN0000023405 CCACATAACTTCGTGGTAGAT pLKO.1 1183 CDS 100% 4.950 3.465 N Erbb4 n/a
15 TRCN0000023398 CCTGCAGGAATACAGCACAAA pLKO.1 4029 CDS 100% 4.950 3.465 N LOC241079 n/a
16 TRCN0000023624 CGCAGGAACAGAGAACAAACT pLKO.1 390 CDS 100% 4.950 3.465 N Gm642 n/a
17 TRCN0000023408 GCACCCAATCAAGCTCAACTT pLKO.1 2413 CDS 100% 4.950 3.465 N Erbb4 n/a
18 TRCN0000023396 GCGGAGGATGAATACGTGAAT pLKO.1 3847 CDS 100% 4.950 3.465 N LOC241079 n/a
19 TRCN0000023406 GCTTTGACATTTGCTGTCTAT pLKO.1 2305 CDS 100% 4.950 3.465 N Erbb4 n/a
20 TRCN0000023460 GCCTCTGGAGAATTTACGCAT pLKO.1 594 CDS 100% 2.640 1.848 N Gm1295 n/a
21 TRCN0000023627 CGAGGTAGTCATGGGCAACCT pLKO.1 471 CDS 100% 0.880 0.616 N Gm642 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010154.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14633 pDONR223 0% 88.8% 96.1% None (many diffs) n/a
2 ccsbBroad304_14633 pLX_304 0% 88.8% 96.1% V5 (many diffs) n/a
3 TRCN0000480991 TGCACGGACTTGATTTCCTAAATA pLX_317 9.9% 88.7% 96.1% V5 (many diffs) n/a
4 TRCN0000488897 CTGCGATCTAATACCCTCCTTAAG pLX_317 8.7% 88.8% 96.1% V5 (not translated due to prior stop codon) (many diffs) n/a
5 TRCN0000488250 AACCAACTACTCAGGGACGGGAAA pLX_317 7.1% 88.8% 96.1% V5 (many diffs) n/a
6 TRCN0000491781 GATCGAATTTTATTGGACAGATTC pLX_317 20.7% 41.2% .4% V5 (not translated due to prior stop codon) (many diffs) n/a
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