Construct: ORF TRCN0000489721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019493.1_s317c1
- DNA Barcode:
- TTAGACGGACATTGTATCAGTATC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CSNK1G3 (1456)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489721
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009070.2 | 27% | 23.5% | (many diffs) |
| 2 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364143.2 | 27% | 23.4% | (many diffs) |
| 3 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001031812.3 | 26.5% | 23% | (many diffs) |
| 4 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001270572.1 | 26.5% | 23% | (many diffs) |
| 5 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_005271895.3 | 26.5% | 23% | (many diffs) |
| 6 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009069.1 | 26.5% | 23% | (many diffs) |
| 7 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009068.2 | 25.5% | 22.1% | (many diffs) |
| 8 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009067.2 | 25.5% | 22.1% | (many diffs) |
| 9 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_004384.4 | 25.1% | 21.8% | (many diffs) |
| 10 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_005271894.3 | 25.1% | 21.8% | (many diffs) |
| 11 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364141.2 | 25.1% | 21.7% | (many diffs) |
| 12 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009065.2 | 25.1% | 21.7% | (many diffs) |
| 13 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009064.2 | 25% | 21.7% | (many diffs) |
| 14 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001044723.2 | 24.7% | 21.4% | (many diffs) |
| 15 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_005271892.3 | 24.7% | 21.4% | (many diffs) |
| 16 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364140.2 | 24.6% | 21.3% | (many diffs) |
| 17 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009063.2 | 23.7% | 20.6% | (many diffs) |
| 18 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009061.2 | 23.4% | 20.3% | (many diffs) |
| 19 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009062.1 | 23.4% | 20.3% | (many diffs) |
| 20 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009057.2 | 23.3% | 20.2% | (many diffs) |
| 21 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009059.1 | 23.3% | 20.2% | (many diffs) |
| 22 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009060.1 | 23.3% | 20.2% | (many diffs) |
| 23 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526237.1 | 25.8% | 23% | (many diffs) |
| 24 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526236.1 | 25.7% | 22.9% | (many diffs) |
| 25 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526235.1 | 25.3% | 22.5% | (many diffs) |
| 26 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | NM_152809.2 | 25.2% | 22.5% | (many diffs) |
| 27 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526234.2 | 24% | 21.3% | (many diffs) |
| 28 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526233.2 | 23.9% | 21.3% | (many diffs) |
| 29 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526232.2 | 23.6% | 21% | (many diffs) |
| 30 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526231.2 | 23.5% | 21% | (many diffs) |
| 31 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526230.2 | 23.5% | 20.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 114
- ORF end:
- 414
- ORF length:
- 300
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggctccgc ggccgccccc TTCACCGAAT TCGTGGAGTA CCGCAAACTT GATATGGAAA 121 ATAAAAAGAA AGACAAGGAC AAATCAGATG ATAGAATGGC ACGACCTAGT GGTCGATCGG 181 GACACAACAC TCGAGGAACT GGGTCTTCAT CGTCTGGAGT TTTAATGGTT GGACCTAACT 241 TTAGAGTTGG AAAAAAAATT GGATGTGGCA ATTTTGGAGA ATTACGATTA GGGAAAAATT 301 TATACACAAA TGAATATGTG GCAATTAAGT TGGAGCCCAT GAAATCAAGA GCACCACAGC 361 TACATTTGGA ATACAGATTC TATAAGCAGT TAGGATCTGG TAGAAGTGAT GGATGAAACC 421 AAGTGCTGCT GTTTTTTCAA ACGAAGGAAA AGGAAAACCA TACAGCGCCA CAAAAAGGGT 481 GGGCGCGCCG ACCCAGCTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC 541 CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG 601 ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATTAGA CGGACATTGT ATCAGTATCA 661 CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg tgaaagatt