Construct: ORF TRCN0000489797

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021687.1_s317c1
DNA Barcode:
TTACCACTATACTGGCTATAGAAC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
AXL (558)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489797
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 558 AXL AXL receptor tyrosine kinase NM_001278599.1 65.3% 1_649del;742C>T;1487A>G
2 human 558 AXL AXL receptor tyrosine kinase NM_001699.6 46.2% 1_1426del;1519C>T;2264A>G
3 human 558 AXL AXL receptor tyrosine kinase NM_021913.5 45.7% 1_1453del;1546C>T;2291A>G
4 mouse 26362 Axl AXL receptor tyrosine kinase XM_006539993.2 46.5% (many diffs)
5 mouse 26362 Axl AXL receptor tyrosine kinase NM_001190975.1 45.9% (many diffs)
6 mouse 26362 Axl AXL receptor tyrosine kinase XM_006539992.2 45.9% (many diffs)
7 mouse 26362 Axl AXL receptor tyrosine kinase NM_001190974.1 41.3% (many diffs)
8 mouse 26362 Axl AXL receptor tyrosine kinase XM_006539991.3 41.3% (many diffs)
9 mouse 26362 Axl AXL receptor tyrosine kinase NM_009465.4 40.9% (many diffs)
10 mouse 26362 Axl AXL receptor tyrosine kinase XM_006539989.3 40.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
196
ORF end:
199
ORF length:
3
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggctttga accaacagtg gaaagaggtg aactggtagt caggtaccgc gtgcgcaagt
121cctacagtcg tcggaccact gaagctacct tgaacagctt gggcatcagt gaagagctga
181aggagaagct gcgggatgtg atggtggacc ggcacaaggt ggccctgggg aagactctgg
241gagagggaga gtttggagct gtgatggaag gccagctcaa ccaggacgac tccatcctca
301aggtggctgt gaagacgatg aagattgcca tctgcacgag gtcagagctg gaggatttcc
361tgagtgaagc ggtctgcatg aaggaatttg accatcccaa cgtcatgagg ctcatcggtg
421tctgtttcca gggttctgaa cgagagagct tcccagcacc tgtggtcatc ttacctttca
481tgaaacatgg agacctacac agcttcctcc tctattcccg gctcggggac cagccagtgt
541acctgcccac tcagatgcta gtgaagttca tggcagacat cgccagtggc atggagtatc
601tgagtaccaa gagattcata caccgggacc tggcggccag gaactgcatg ctgaatgaga
661acatgtccgt gtgtgtggcg gacttcgggc tctccaagaa gatctacaat ggggactact
721accgccaggg acgtatcgcc aagatgccag tcaagtggat tgccattgag agtctagctg
781accgtgtcta caccagcaag agcgatgtgt ggtccttcgg ggtgacaatg tgggagattg
841ccacaagagg ccaaacccca tatccgggcg tggagaacag cgagatttat gactatctgc
901gccggggaaa tcgcctgaag cagcctGCGG ACTGTCTGGA TGGACTGTAT GCCTTGATGT
961CGCGGTGCTG GGAGCTAAAT CCCCAGGACC GGCCAAGTTT TACAGAGCTG CGGGAAGATT
1021TGGAGAACAC ACTGAAGGCC TTGCCTCCTG CCCAGGAGCC TGACGAAATC CTCTATGTCA
1081ACATGGATGA GGGTGGAGGT TATCCTGAAC CCCCTGGAGC TGCAGGAGGA GCTGACCCCC
1141CAACCCAGCC AGACCCTAAG GATTCCTGTA GCTGCCTCAC TGCGGCTGAG GTCCATCCTG
1201CTGGACGCTA TGTCCTCTGC CCTTCCACAA CCCCTAGCCC CGCTCAGCCT GCTGATAGGG
1261GCTCCCCAGC AGCCCCAGGG CAGGAGGATG GTGCCTGAGA CCCAGCTTTC TTGTACAAAG
1321TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1381GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1441ACGATTACCA CTATACTGGC TATAGAACAC GCGTTAAGTC gacaatcaac ctctggatta
1501caaaatttgt gaaagatt

Download FASTA (ORF) (Full)

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