Construct: ORF TRCN0000491625

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010460.2_s317c1
Derived from:
ccsbBroadEn_07036
DNA Barcode:
GACTCGGAGTCTTCTAGGCAACCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCF4 (6925)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491625
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6925 TCF4 transcription factor 4 NM_001083962.2 99.9% 100% 1941A>G
2 human 6925 TCF4 transcription factor 4 NM_001369567.1 99.9% 100% 1941A>G
3 human 6925 TCF4 transcription factor 4 NM_001369568.1 99.9% 100% 1941A>G
4 human 6925 TCF4 transcription factor 4 NM_001330604.3 99.8% 99.8% 1066_1067insCAG;1938A>G
5 human 6925 TCF4 transcription factor 4 NM_001369569.1 99.8% 99.8% 366_367insCAG;1938A>G
6 human 6925 TCF4 transcription factor 4 NM_001369570.1 99.8% 99.8% 366_367insCAG;1938A>G
7 human 6925 TCF4 transcription factor 4 NM_001369571.1 99.3% 99.4% 1633_1634insCTAGGTCAAGAT;1929A>G
8 human 6925 TCF4 transcription factor 4 NM_001369572.1 99.3% 99.4% 1633_1634insCTAGGTCAAGAT;1929A>G
9 human 6925 TCF4 transcription factor 4 NM_003199.3 99.3% 99.4% 1633_1634insCTAGGTCAAGAT;1929A>G
10 human 6925 TCF4 transcription factor 4 NM_001369573.1 99.2% 99.2% 366_367insCAG;1630_1631insCTAGGTCAAGAT;1926A>G
11 human 6925 TCF4 transcription factor 4 NM_001369574.1 99.2% 99.2% 1066_1067insCAG;1630_1631insCTAGGTCAAGAT;1926A>G
12 human 6925 TCF4 transcription factor 4 NM_001243228.2 99% 99.1% 550_567del;1959A>G
13 human 6925 TCF4 transcription factor 4 NM_001243227.2 96.3% 96.4% 0_1ins72;1869A>G
14 human 6925 TCF4 transcription factor 4 NM_001348217.1 96.3% 96.4% 0_1ins72;1869A>G
15 human 6925 TCF4 transcription factor 4 NM_001348218.2 96.3% 96.4% 0_1ins72;1869A>G
16 human 6925 TCF4 transcription factor 4 NM_001369575.1 96.3% 96.4% 0_1ins72;1869A>G
17 human 6925 TCF4 transcription factor 4 NM_001243230.1 96.3% 96.2% (many diffs)
18 human 6925 TCF4 transcription factor 4 NM_001369586.1 96.2% 96.1% 0_1ins72;998_1000delGTA;1872A>G
19 human 6925 TCF4 transcription factor 4 NM_001369576.1 96.2% 96.2% 0_1ins72;294_295insCAG;1866A>G
20 human 6925 TCF4 transcription factor 4 NM_001369577.1 96.2% 96.2% 0_1ins72;994_995insCAG;1866A>G
21 human 6925 TCF4 transcription factor 4 NM_001369578.1 96.2% 96.2% 0_1ins72;294_295insCAG;1866A>G
22 human 6925 TCF4 transcription factor 4 NM_001369579.1 96.2% 96.2% 0_1ins72;994_995insCAG;1866A>G
23 human 6925 TCF4 transcription factor 4 NM_001369580.1 96.2% 96.2% 0_1ins72;994_995insCAG;1866A>G
24 human 6925 TCF4 transcription factor 4 NM_001369581.1 96.2% 96.2% 0_1ins72;294_295insCAG;1866A>G
25 human 6925 TCF4 transcription factor 4 XM_006722538.3 96.2% 96.2% 0_1ins72;294_295insCAG;1866A>G
26 human 6925 TCF4 transcription factor 4 NM_001306207.1 95.7% 95.8% 0_1ins72;1561_1562insCTAGGTCAAGAT;1857A>G
27 human 6925 TCF4 transcription factor 4 NM_001348219.2 95.7% 95.8% 0_1ins72;1561_1562insCTAGGTCAAGAT;1857A>G
28 human 6925 TCF4 transcription factor 4 NM_001369582.1 95.7% 95.8% 0_1ins72;1561_1562insCTAGGTCAAGAT;1857A>G
29 human 6925 TCF4 transcription factor 4 NM_001369583.1 95.7% 95.8% 0_1ins72;1561_1562insCTAGGTCAAGAT;1857A>G
30 human 6925 TCF4 transcription factor 4 NM_001348220.1 95.6% 95.6% (many diffs)
31 human 6925 TCF4 transcription factor 4 NM_001369584.1 95.6% 95.6% (many diffs)
32 human 6925 TCF4 transcription factor 4 NM_001369585.1 95.6% 95.6% (many diffs)
33 human 6925 TCF4 transcription factor 4 XM_017025950.2 95.4% 95.5% (many diffs)
34 human 6925 TCF4 transcription factor 4 NM_001348211.2 93.4% 92.6% (many diffs)
35 human 6925 TCF4 transcription factor 4 XM_017025951.2 93.3% 92.5% (many diffs)
36 human 6925 TCF4 transcription factor 4 NM_001243231.2 92.8% 92.1% (many diffs)
37 human 6925 TCF4 transcription factor 4 XM_024451241.1 88.1% 88.2% 0_1ins237;1704A>G
38 human 6925 TCF4 transcription factor 4 NM_001243226.3 86.7% 86.8% 1_306del;2247A>G
39 human 6925 TCF4 transcription factor 4 XM_005266749.4 86.7% 82.9% (many diffs)
40 human 6925 TCF4 transcription factor 4 NM_001243232.1 86.5% 82.8% (many diffs)
41 human 6925 TCF4 transcription factor 4 XM_017025952.2 86.4% 82.7% (many diffs)
42 human 6925 TCF4 transcription factor 4 XM_017025953.2 86.1% 82.4% (many diffs)
43 human 6925 TCF4 transcription factor 4 NM_001306208.1 86% 82.2% (many diffs)
44 human 6925 TCF4 transcription factor 4 NM_001330605.3 80.5% 80.6% 0_1ins390;1551A>G
45 human 6925 TCF4 transcription factor 4 NM_001348213.2 80.5% 80.6% 0_1ins390;1551A>G
46 human 6925 TCF4 transcription factor 4 XM_005266752.5 80.5% 80.6% 0_1ins390;1551A>G
47 human 6925 TCF4 transcription factor 4 XM_005266755.5 80.5% 80.6% 0_1ins390;1551A>G
48 human 6925 TCF4 transcription factor 4 XM_017025954.2 80.4% 80.4% 0_1ins390;676_677insCAG;1548A>G
49 human 6925 TCF4 transcription factor 4 NM_001243233.2 79.9% 80% 0_1ins390;1243_1244insCTAGGTCAAGAT;1539A>G
50 human 6925 TCF4 transcription factor 4 NM_001348212.2 79.9% 80% 0_1ins390;1243_1244insCTAGGTCAAGAT;1539A>G
51 human 6925 TCF4 transcription factor 4 XM_017025956.2 79.9% 80% 0_1ins390;1243_1244insCTAGGTCAAGAT;1539A>G
52 human 6925 TCF4 transcription factor 4 NM_001348216.2 75.2% 72.5% (many diffs)
53 human 6925 TCF4 transcription factor 4 NM_001243236.2 74.6% 71.9% (many diffs)
54 human 6925 TCF4 transcription factor 4 NM_001243234.2 74.4% 71.9% (many diffs)
55 human 6925 TCF4 transcription factor 4 XM_005266761.4 74.3% 71.8% (many diffs)
56 human 6925 TCF4 transcription factor 4 NM_001243235.2 73.8% 71.3% (many diffs)
57 human 6925 TCF4 transcription factor 4 NM_001348214.2 73.7% 71.2% (many diffs)
58 human 6925 TCF4 transcription factor 4 NM_001348215.2 67.7% 67.8% 0_1ins648;1293A>G
59 mouse 21413 Tcf4 transcription factor 4 NM_013685.2 92.4% 98% (many diffs)
60 mouse 21413 Tcf4 transcription factor 4 XM_006525746.3 92.4% 98% (many diffs)
61 mouse 21413 Tcf4 transcription factor 4 XM_006525747.3 92.4% 98% (many diffs)
62 mouse 21413 Tcf4 transcription factor 4 XM_006525748.3 92.3% 97.9% (many diffs)
63 mouse 21413 Tcf4 transcription factor 4 XM_006525749.3 92.3% 97.9% (many diffs)
64 mouse 21413 Tcf4 transcription factor 4 XM_017317854.1 92.3% 97.9% (many diffs)
65 mouse 21413 Tcf4 transcription factor 4 XM_017317855.1 92.3% 97.9% (many diffs)
66 mouse 21413 Tcf4 transcription factor 4 XM_017317856.1 92.2% 97.7% (many diffs)
67 mouse 21413 Tcf4 transcription factor 4 NM_001083967.1 91.9% 97.4% (many diffs)
68 mouse 21413 Tcf4 transcription factor 4 XM_006525750.3 91.9% 97.4% (many diffs)
69 mouse 21413 Tcf4 transcription factor 4 XM_017317857.1 91.9% 97.4% (many diffs)
70 mouse 21413 Tcf4 transcription factor 4 XM_006525751.3 91.7% 97.3% (many diffs)
71 mouse 21413 Tcf4 transcription factor 4 XM_006525752.3 91.7% 97.3% (many diffs)
72 mouse 21413 Tcf4 transcription factor 4 XM_017317858.1 91.6% 97.1% (many diffs)
73 mouse 21413 Tcf4 transcription factor 4 XM_006525753.3 88.9% 94.4% (many diffs)
74 mouse 21413 Tcf4 transcription factor 4 XM_017317859.1 88.7% 94.3% (many diffs)
75 mouse 21413 Tcf4 transcription factor 4 XM_006525757.3 73.9% 79.1% (many diffs)
76 mouse 21413 Tcf4 transcription factor 4 XM_006525759.3 73.9% 79.1% (many diffs)
77 mouse 21413 Tcf4 transcription factor 4 XM_017317860.1 73.9% 79.1% (many diffs)
78 mouse 21413 Tcf4 transcription factor 4 XM_017317863.1 73.9% 79.1% (many diffs)
79 mouse 21413 Tcf4 transcription factor 4 XM_017317861.1 73.3% 78.5% (many diffs)
80 mouse 21413 Tcf4 transcription factor 4 XM_006525760.3 69% 70.6% (many diffs)
81 mouse 21413 Tcf4 transcription factor 4 XM_006525766.3 68.8% 70.4% (many diffs)
82 mouse 21413 Tcf4 transcription factor 4 XM_006525762.3 68.4% 70% (many diffs)
83 mouse 21413 Tcf4 transcription factor 4 XM_006525761.3 68.4% 71.2% (many diffs)
84 mouse 21413 Tcf4 transcription factor 4 XM_006525763.3 67.8% 70.6% (many diffs)
85 mouse 21413 Tcf4 transcription factor 4 XM_006525764.3 61.8% 66.6% (many diffs)
86 mouse 21413 Tcf4 transcription factor 4 XM_017317862.1 61.2% 66% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2082
ORF length:
2013
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcatcaccaa cagcgaatgg ctgccttagg gacggacaaa gagctgagtg
121atttactgga tttcagtgcg atgttttcac ctcctgtgag cagtgggaaa aatggaccaa
181cttctttggc aagtggacat tttactggct caaatgtaga agacagaagt agctcagggt
241cctgggggaa tggaggacat ccaagcccgt ccaggaacta tggagatggg actccctatg
301accacatgac cagcagggac cttgggtcac atgacaatct ctctccacct tttgtcaatt
361ccagaataca aagtaaaaca gaaaggggct catactcatc ttatgggaga gaatcaaact
421tacagggttg ccaccagcag agtctccttg gaggtgacat ggatatgggc aacccaggaa
481ccctttcgcc caccaaacct ggttcccagt actatcagta ttctagcaat aatccccgaa
541ggaggcctct tcacagtagt gccatggagg tacagacaaa gaaagttcga aaagttcctc
601caggtttgcc atcttcagtc tatgctccat cagcaagcac tgccgactac aatagggact
661cgccaggcta tccttcctcc aaaccagcaa ccagcacttt ccctagctcc ttcttcatgc
721aagatggcca tcacagcagt gacccttgga gctcctccag tgggatgaat cagcctggct
781atgcaggaat gttgggcaac tcttctcata ttccacagtc cagcagctac tgtagcctgc
841atccacatga acgtttgagc tatccatcac actcctcagc agacatcaat tccagtcttc
901ctccgatgtc cactttccat cgtagtggta caaaccatta cagcacctct tcctgtacgc
961ctcctgccaa cgggacagac agtataatgg caaatagagg aagcggggca gccggcagct
1021cccagactgg agatgctctg gggaaagcac ttgcttcgat ctattctcca gatcacacta
1081acaacagctt ttcatcaaac ccttcaactc ctgttggctc tcctccatct ctctcagcag
1141gcacagctgt ttggtctaga aatggaggac aggcctcatc gtctcctaat tatgaaggac
1201ccttacactc tttgcaaagc cgaattgaag atcgtttaga aagactggat gatgctattc
1261atgttctccg gaaccatgca gtgggcccat ccacagctat gcctggtggt catggggaca
1321tgcatggaat cattggacct tctcataatg gagccatggg tggtctgggc tcagggtatg
1381gaaccggcct tctttcagcc aacagacatt cactcatggt ggggacccat cgtgaagatg
1441gcgtggccct gagaggcagc cattctcttc tgccaaacca ggttccggtt ccacagcttc
1501ctgtccagtc tgcgacttcc cctgacctga acccacccca ggacccttac agaggcatgc
1561caccaggact acaggggcag agtgtctcct ctggcagctc tgagatcaaa tccgatgacg
1621agggtgatga gaacctgcaa gacacgaaat cttcggagga caagaaatta gatgacgaca
1681agaaggatat caaatcaatt actaggtcaa gatctagcaa taatgacgat gaggaCCTGA
1741CACCAGAGCA GAAGGCAGAG CGTGAGAAGG AGCGGAGGAT GGCCAACAAT GCCCGAGAGC
1801GTCTGCGGGT CCGTGACATC AACGAGGCTT TCAAAGAGCT CGGCCGCATG GTGCAGCTCC
1861ACCTCAAGAG TGACAAGCCC CAGACCAAGC TCCTGATCCT CCACCAGGCG GTGGCCGTCA
1921TCCTCAGTCT GGAGCAGCAA GTCCGAGAAA GGAATCTGAA TCCGAAAGCT GCGTGTCTGA
1981AAAGAAGGGA GGAAGAGAAG GTGTCCTCGG AGCCTCCCCC TCTCTCCTTG GCCGGCCCAC
2041ACCCTGGAAT GGGAGACGCA TCGAATCACA TGGGACAGAT GTTGCCAACT TTCTTGTACA
2101AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
2161AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2221AGGACGAGAC TCGGAGTCTT CTAGGCAACC TACGCGTTAA GTCgacaatc aacctctgga
2281ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)