Construct: ORF TRCN0000491737

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021220.2_s317c1
DNA Barcode:
TACACAACTTACAGCATTCAAGTC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SORCS3 (22986)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491737
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22986 SORCS3 sortilin related VPS10 doma... NM_014978.3 99.9% 100% 1368C>T
2 human 22986 SORCS3 sortilin related VPS10 doma... XM_011539542.2 70.8% 70.8% 0_1ins1068;300C>T
3 mouse 66673 Sorcs3 sortilin-related VPS10 doma... NM_025696.3 88.2% 92.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
3738
ORF length:
3666
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggaggcg gcgcgcacgg agcgccccgc aggcaggccg ggggcgccgc
121ttgtccggac ggggctccta ctcttgtcga cgtgggtcct ggccggcgcc gagatcactt
181gggacgcgac aggcggtccc ggacgcccgg cggccccggc ttcgcggcca ccggcgttgt
241ctccactctc gccgcgggca gtggccagcc agtggccgga ggagctggcg tcggcgcgga
301gagccgccgt gctggggcgc cgggccggac cagagctgct gccccagcag ggcggcggca
361gaggcggtga gatgcaggtg gaagccggag ggacatcacc ggcaggcgag cggcggggcc
421ggggcatccc agctcctgcc aagcttggcg gcgcgaggag gagtcgccgg gcgcagcccc
481caatcaccca ggaacgcggg gacgcctggg ccactgctcc ggccgatggt tccagaggaa
541gccgtcccct tgctaagggt tcccgggagg aggtgaaggc gccgcgggct ggggggtcgg
601cggctgaaga cctccggctg cccagcacct ccttcgcgct gaccggggac tcggcccaca
661accaagccat ggtgcactgg tcgggacaca acagcagcgt catacttatc ctgacgaagc
721tgtatgactt caacctgggc agcgtgactg agagttcact atggaggtcg acagattatg
781gcaccaccta tgaaaagctg aatgacaaag tgggtttgaa gactgtcctc agttacctct
841atgtcaatcc aaccaacaaa aggaagatta tgcttctcag tgatcctgag atggagagca
901gcatattgat cagctcagac gaaggggcga cctatcagaa gtatcggctc accttctata
961tccagagcct gctctttcat cccaagcaag aggactgggt gctggcctac agtttggatc
1021aaaagctcta cagctccatg gactttggaa gacggtggca actcatgcat gaacgcatca
1081cacccaacag gttttattgg tcggtggccg gattggataa ggaggcggac ctggtgcaca
1141tggaggtgcg gaccacggat ggatatgctc actacctcac ctgcaggatc caggaatgtg
1201ccgagacaac tagaagtggg ccttttgccc gctccattga catcagttcc ctggttgtcc
1261aggatgaata tatcttcatt caggtaacaa ctagtggaag agccagctac tacgtgtctt
1321atcgaagaga ggcctttgct cagataaagc tgcctaagta ctcgttgcca aaggacatgc
1381acatcatcag tacagacgag aaccaagtat ttgctgcggt ccaagaatgg aaccagaatg
1441acacgtacaa cctctacatc tcagacacgc gtgggattta cttcactctg gccatggaga
1501acatcaagag cagcagaggt ctaatgggga acatcattat tgaattgtat gaggtagcag
1561gtatcaaagg gatatttctg gcaaacaaga aggtggacga ccaggtgaag acatacatca
1621cttacaacaa aggcagggat tggcgcctgc tgcaagctcc ggatgtggac ctgagaggaa
1681gcccagtgca ctgcctgctg cccttctgtt ccttacatct gcacctgcaa ctctctgaaa
1741atccatattc ctcaggaaga atctctagca aggagacagc cccaggactt gtggtggcta
1801caggcaacat tggcccggag ctctcatata ctgatattgg tgtgttcatc tcctccgatg
1861ggggcaacac atggagacag atctttgatg aagagtacaa tgtctggttc ctagactggg
1921gtggtgccct cgtggccatg aaacacacac ctctgccagt caggcatttg tgggtgagtt
1981ttgatgaggg ccactcttgg gacaagtatg gtttcacttc ggttcctctc tttgttgacg
2041gggctctggt ggaggcagga atggagaccc acatcatgac agtttttggc cacttcagcc
2101tccgctccga atggcaattg gtgaaagtgg actacaaatc tatcttcagc cggcattgca
2161ccaaggagga ctatcagacc tggcacctgc tcaatcaggg agagccttgt gtcatgggag
2221aaaggaaaat attcaagaaa cgtaagccag gagctcagtg tgccctgggc cgagaccact
2281caggatcagt ggtctcagaa ccctgtgtct gtgccaattg ggacttcgag tgtgactatg
2341ggtatgagag acatggggag agccagtgtg tcccagcttt ctggtacaat ccagcatccc
2401catcaaagga ctgcagcctt ggtcaaagct accttaacag cactgggtat cggcggattg
2461tgtccaacaa ctgcacagat gggctaaggg agaagtacac cgccaaggcc cagatgtgcc
2521ctggaaaagc ccctcggggc ctccatgtgg tgacgaccga tgggcggctg gtggcagagc
2581aggggcacaa tgcaactttc atcatcctca tggaggaggg tgatctacaa aggacaaaca
2641tccagcttga ctttggggat gggattgctg tgtcctacgc aaacttcagc cccatcgagg
2701acggcatcaa gcacgtgtat aagagtgcgg ggatcttcca ggtgacagcc tatgcagaga
2761acaaccttgg ctcagacaca gctgtcctct tcctgcatgt ggtttgtcct gtggagcatg
2821ttcatctccg agttccattt gttgccataa gaaataagga ggtcaacatc agtgcagtcg
2881tgtggcccag tcaactgggg acccttacct atttctggtg gttcggcaat agcacaaagc
2941ctctcatcac tttggacagc agcatttcct tcacattcct tgcagaagga accgacacca
3001tcacagtcca ggtggctgct gggaatgccc tcatccagga cacaaaagag attgcagttc
3061atgaatattt ccagtcccag cttttatcat tctctcctaa tctggattac cacaatcctg
3121acattcctga gtggagaaaa gatattggca atgtcatcaa gcgagctctg gttaaagtaa
3181ccagtgtccc agaggaccag atcctcattg ccgtgtttcc tggtctcccc acttcagcag
3241agcttttcat tcttccaccc aagaacctga cagagaggag gaaaggcaat gaaggggacc
3301tggaacaaat tgtagaaaca ctgtttaatg ctctcaacca aaatttggtc cagtttgagc
3361tgaagccggg ggtacaagtc attgtgtatg tcacacagct gacgttagct ccattggtgg
3421actccagtgc tgggcacagc agctcagcca tgcttatgct attatcagtg gtatttgttg
3481gcctGGCTGT GTTTTTGATC TACAAGTTTA AAAGGAAAAT CCCTTGGATT AACATCTATG
3541CTCAAGTCCA ACACGACAAG GAGCAGGAGA TGATTGGGTC AGTGAGCCAA AGTGAAAACG
3601CCCCCAAAAT CACACTCAGT GACTTTACGG AGCCTGAGGA GCTGCTGGAC AAAGAGCTGG
3661ACACGCGGGT CATAGGAGGC ATTGCCACTA TTGCAAACAG CGAAAGCACA AAGGAGATCC
3721CCAACTGCAC TAGTGTTTAG AACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
3781CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
3841AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATACA CAACTTACAG
3901CATTCAAGTC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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