Construct: ORF ccsbBroad304_01233

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003958.1_s304c1, BRDN0000405342
Derived from:
ccsbBroadEn_01233
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEPTIN4 (5414)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01233
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5414 SEPTIN4 septin 4 NM_004574.4 100% 100%
2 human 5414 SEPTIN4 septin 4 NM_001198713.1 97.6% 95.6% (many diffs)
3 human 5414 SEPTIN4 septin 4 NM_001368772.1 97.5% 96% (many diffs)
4 human 5414 SEPTIN4 septin 4 XM_006721949.3 96.9% 95.6% (many diffs)
5 human 5414 SEPTIN4 septin 4 NM_080416.3 95.8% 95.8% 1_2delATins59
6 human 5414 SEPTIN4 septin 4 NM_001256782.1 94.8% 93.9% (many diffs)
7 human 5414 SEPTIN4 septin 4 NM_001363803.1 79.2% 79.2% 59_60ins297
8 human 5414 SEPTIN4 septin 4 XM_006721950.4 79.2% 75.6% (many diffs)
9 human 5414 SEPTIN4 septin 4 NR_104197.1 78.2% (many diffs)
10 human 5414 SEPTIN4 septin 4 XR_002958032.1 77.6% (many diffs)
11 human 5414 SEPTIN4 septin 4 XR_002958031.1 75.7% (many diffs)
12 human 5414 SEPTIN4 septin 4 XM_006721952.3 75.3% 75.1% 0_1ins346;2_3insTCCTCTGA
13 human 5414 SEPTIN4 septin 4 XR_002958037.1 74.5% (many diffs)
14 human 5414 SEPTIN4 septin 4 NR_104196.1 69.5% 1_293del;1571_1725del;1883_2063del
15 human 5414 SEPTIN4 septin 4 NM_001256822.1 69.2% 69.2% 0_1ins441
16 human 5414 SEPTIN4 septin 4 XM_006721954.3 69.2% 69.2% 0_1ins441
17 human 5414 SEPTIN4 septin 4 XM_006721955.3 69.2% 69.2% 0_1ins441
18 human 5414 SEPTIN4 septin 4 XM_011524911.1 69.2% 69.2% 0_1ins441
19 human 5414 SEPTIN4 septin 4 XM_011524912.2 69.2% 69.2% 0_1ins441
20 human 5414 SEPTIN4 septin 4 XM_024450807.1 69.2% 69.2% 0_1ins441
21 human 5414 SEPTIN4 septin 4 XM_024450808.1 69.2% 69.2% 0_1ins441
22 human 5414 SEPTIN4 septin 4 XR_002958034.1 67.5% (many diffs)
23 human 5414 SEPTIN4 septin 4 XR_002958039.1 67.2% (many diffs)
24 human 5414 SEPTIN4 septin 4 XR_002958036.1 64.1% (many diffs)
25 human 5414 SEPTIN4 septin 4 XR_002958033.1 63.8% (many diffs)
26 human 5414 SEPTIN4 septin 4 NR_037155.2 58.9% (many diffs)
27 human 5414 SEPTIN4 septin 4 NM_080415.3 54.3% 52.3% (many diffs)
28 human 5414 SEPTIN4 septin 4 XR_002958040.1 47.4% (many diffs)
29 human 5414 SEPTIN4 septin 4 NM_001368771.2 47.1% 45.8% (many diffs)
30 human 5414 SEPTIN4 septin 4 XR_002958035.1 34.1% (many diffs)
31 human 5414 SEPTIN4 septin 4 XR_002958038.1 29.2% (many diffs)
32 mouse 18952 Sept4 septin 4 NM_011129.2 89.7% 92.6% (many diffs)
33 mouse 18952 Sept4 septin 4 XM_006532497.3 87.3% 89.5% (many diffs)
34 mouse 18952 Sept4 septin 4 NM_001368776.1 86.3% 87.8% (many diffs)
35 mouse 18952 Sept4 septin 4 NM_001361936.1 85.8% 88.9% (many diffs)
36 mouse 18952 Sept4 septin 4 NM_001284394.1 81.1% 82.4% (many diffs)
37 mouse 18952 Sept4 septin 4 XM_030245664.1 78.8% 79.2% (many diffs)
38 mouse 18952 Sept4 septin 4 NM_001368779.1 77.8% 77.7% (many diffs)
39 mouse 18952 Sept4 septin 4 NM_001368778.1 77.3% 78.6% (many diffs)
40 mouse 18952 Sept4 septin 4 NM_001284392.1 72.4% 77.8% (many diffs)
41 mouse 18952 Sept4 septin 4 XM_030245665.1 69.6% 74.8% (many diffs)
42 mouse 18952 Sept4 septin 4 NM_001368777.1 68.7% 74% (many diffs)
43 mouse 18952 Sept4 septin 4 XM_030245666.1 63.8% 67.5% (many diffs)
44 mouse 18952 Sept4 septin 4 XM_030245667.1 63% 68.2% (many diffs)
45 mouse 18952 Sept4 septin 4 NM_001284398.1 60.1% 63.8% (many diffs)
46 mouse 18952 Sept4 septin 4 XM_006532493.2 43.5% 43.7% (many diffs)
47 mouse 18952 Sept4 septin 4 NM_001368775.1 39.3% 38.7% (many diffs)
48 mouse 18952 Sept4 septin 4 XR_388364.2 36.6% (many diffs)
49 mouse 18952 Sept4 septin 4 XR_001779919.2 35.1% (many diffs)
50 mouse 18952 Sept4 septin 4 XM_030245663.1 26.8% 23.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1503
ORF length:
1434
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggaccgttca ctgggatggc aagggaattc tgtccctgag gacaggactg
121aagctgggat caagcgtttc ctggaggaca ccacggatga tggagaactg agcaagttcg
181tgaaggattt ctcaggaaat gcgagctgcc acccaccaga ggctaagacc tgggcatcca
241ggccccaagt cccggagcca aggccccagg ccccggacct ctatgatgat gacctggagt
301tcagaccccc ctcgcggccc cagtcctctg acaaccagca gtacttctgt gccccagccc
361ctctcagccc atctgccagg ccccgcagcc catggggcaa gcttgatccc tatgattcct
421ctgaggatga caaggagtat gtgggctttg caaccctccc caaccaagtc caccgaaagt
481ccgtgaagaa aggctttgac tttaccctca tggtggcagg agagtctggc ctgggcaaat
541ccacacttgt caatagcctc ttcctcactg atctgtaccg ggaccggaaa cttcttggtg
601ctgaagagag gatcatgcaa actgtggaga tcactaagca tgcagtggac atagaagaga
661agggtgtgag gctgcggctc accattgtgg acacaccagg ttttggggat gcagtcaaca
721acacagagtg ctggaagcct gtggcagaat acattgatca gcagtttgag cagtatttcc
781gagacgagag tggcctgaac cgaaagaaca tccaagacaa cagggtgcac tgctgcctgt
841acttcatctc acccttcggc catgggctcc ggccattgga tgttgaattc atgaaggccc
901tgcatcagcg ggtcaacatc gtgcctatcc tggctaaggc agacacactg acacctcccg
961aagtggacca caagaaacgc aaaatccggg aggagattga gcattttgga atcaagatct
1021atcaattccc agactgtgac tctgatgagg atgaggactt caaattgcag gaccaagccc
1081taaaggaaag catcccattt gcagtaattg gcagcaacac tgtagtagag gccagagggc
1141ggcgagttcg gggtcgactc tacccctggg gcatcgtgga agtggaaaac ccagggcact
1201gcgactttgt gaagctgagg acaatgctgg tacgtaccca catgcaggac ctgaaggatg
1261tgacacggga gacacattat gagaactacc gggcacagtg catccagagc atgacccgcc
1321tggtggtgaa ggaacggaat cgcaacaaac tgactcggga aagtggtacc gacttcccca
1381tccctgctgt cccaccaggg acagatccag aaactgagaa gcttatccga gagaaagatg
1441aggagctgcg gcggatgcag gagatgctac acaaaataca aaaacagatg aaggagaact
1501atttgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1561tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1621tctggatta

Download FASTA (ORF) (Full)