Construct: ORF ccsbBroad304_02710

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014950.1_s304c1, BRDN0000410223
Derived from:
ccsbBroadEn_02710
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCMH1 (22955)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02710
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22955 SCMH1 Scm polycomb group protein ... NM_001172221.1 100% 100%
2 human 22955 SCMH1 Scm polycomb group protein ... XM_006710464.1 100% 100%
3 human 22955 SCMH1 Scm polycomb group protein ... XM_011541036.2 100% 100%
4 human 22955 SCMH1 Scm polycomb group protein ... XM_017000699.1 100% 100%
5 human 22955 SCMH1 Scm polycomb group protein ... XM_011541035.2 97.7% 97.7% 1_42del
6 human 22955 SCMH1 Scm polycomb group protein ... NM_001172218.2 96.3% 96.3% 1464_1465ins66
7 human 22955 SCMH1 Scm polycomb group protein ... NM_001172220.2 96.3% 96.3% 1464_1465ins66
8 human 22955 SCMH1 Scm polycomb group protein ... NM_001350667.2 94.5% 89.7% 0_1ins94;106_109delGTGA
9 human 22955 SCMH1 Scm polycomb group protein ... XM_024454203.1 94.5% 89.7% 0_1ins94;106_109delGTGA
10 human 22955 SCMH1 Scm polycomb group protein ... XM_024454204.1 94.5% 89.7% 0_1ins94;106_109delGTGA
11 human 22955 SCMH1 Scm polycomb group protein ... XM_024454206.1 94.5% 89.7% 0_1ins94;106_109delGTGA
12 human 22955 SCMH1 Scm polycomb group protein ... NM_012236.4 94.1% 94.1% 1_42del;1506_1507ins66
13 human 22955 SCMH1 Scm polycomb group protein ... XM_017000702.1 90.8% 86% 0_1ins94;106_109delGTGA;1374_1375ins66
14 human 22955 SCMH1 Scm polycomb group protein ... XM_017000703.1 90.8% 86% 0_1ins94;106_109delGTGA;1374_1375ins66
15 human 22955 SCMH1 Scm polycomb group protein ... NM_001031694.2 90.7% 90.7% 1_183del
16 human 22955 SCMH1 Scm polycomb group protein ... XM_011541033.2 90.7% 90.7% 1_183del
17 human 22955 SCMH1 Scm polycomb group protein ... XM_017000698.1 90.1% 90.1% 1_123del;1587_1588ins66
18 human 22955 SCMH1 Scm polycomb group protein ... XM_006710462.2 89.4% 89.4% 1_213del
19 human 22955 SCMH1 Scm polycomb group protein ... XM_011541032.2 89.4% 89.4% 1_213del
20 human 22955 SCMH1 Scm polycomb group protein ... XM_017000700.1 87.7% 81.6% 1_42del;1571_1589del;1692_1693ins166
21 human 22955 SCMH1 Scm polycomb group protein ... NM_001172219.2 86.1% 86.1% 1_213del;1677_1678ins66
22 human 22955 SCMH1 Scm polycomb group protein ... XM_011541043.2 82.1% 82.1% 0_1ins321
23 human 22955 SCMH1 Scm polycomb group protein ... XM_011541044.1 82.1% 82.1% 0_1ins321
24 human 22955 SCMH1 Scm polycomb group protein ... XM_011541034.1 80.3% 74.8% 1_213del;1742_1760del;1863_1864ins166
25 human 22955 SCMH1 Scm polycomb group protein ... XM_017000708.1 79.9% 79.9% 530_531ins360
26 human 22955 SCMH1 Scm polycomb group protein ... NM_001350668.1 78.4% 78.4% 0_1ins321;1143_1144ins66
27 human 22955 SCMH1 Scm polycomb group protein ... XM_017000711.1 76.2% 76.2% 530_531ins360;1104_1105ins66
28 human 22955 SCMH1 Scm polycomb group protein ... XM_017000712.1 76.2% 76.2% 530_531ins360;1104_1105ins66
29 human 22955 SCMH1 Scm polycomb group protein ... NM_001172222.2 76% 76% 1_42del;240_241ins333;1173_1174ins66
30 human 22955 SCMH1 Scm polycomb group protein ... XM_017000713.2 74.5% 69.8% 0_1ins94;106_109delGTGA;440_441ins360
31 human 22955 SCMH1 Scm polycomb group protein ... XR_001737051.1 72.1% (many diffs)
32 human 22955 SCMH1 Scm polycomb group protein ... XM_011541039.1 71.4% 71.4% 1_213del;743_744ins360
33 human 22955 SCMH1 Scm polycomb group protein ... XR_946584.2 69.4% 1_415del;1880_1950del;2071_2072ins212
34 human 22955 SCMH1 Scm polycomb group protein ... XM_011541040.2 66.5% 64.6% (many diffs)
35 human 22955 SCMH1 Scm polycomb group protein ... XR_002959760.1 62.6% (many diffs)
36 human 22955 SCMH1 Scm polycomb group protein ... XR_002959763.1 62.3% 1_415del;1699_2112del;2467_2468ins159
37 human 22955 SCMH1 Scm polycomb group protein ... XR_002959762.1 62.2% 1_415del;1699_2118del;2473_2474ins159
38 human 22955 SCMH1 Scm polycomb group protein ... XR_002959761.1 59.9% (many diffs)
39 human 22955 SCMH1 Scm polycomb group protein ... XR_001737054.1 56.5% 1_364del;1635_1636insCAGGTACCTAC;2151_3145del
40 human 22955 SCMH1 Scm polycomb group protein ... XR_001737045.1 55.1% 1_415del;1880_1933del;2267_3261del
41 human 22955 SCMH1 Scm polycomb group protein ... NR_135092.1 52.6% 1_552del;2017_2070del;2404_3412del
42 human 22955 SCMH1 Scm polycomb group protein ... XR_002959757.1 51.9% 1_415del;1700_1954del;2468_3462del
43 human 22955 SCMH1 Scm polycomb group protein ... XR_001737053.1 51.2% (many diffs)
44 human 22955 SCMH1 Scm polycomb group protein ... XR_001737052.1 50.7% (many diffs)
45 human 22955 SCMH1 Scm polycomb group protein ... XR_001737046.1 50% (many diffs)
46 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_006503150.3 89.9% 92.5% (many diffs)
47 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_011240552.1 84.7% 87.2% (many diffs)
48 mouse 29871 Scmh1 sex comb on midleg homolog 1 NM_013883.2 81.6% 84% (many diffs)
49 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_011240551.1 81.6% 84% (many diffs)
50 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_017320252.1 81.6% 84% (many diffs)
51 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_017320253.1 81.6% 84% (many diffs)
52 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_011240550.1 80.6% 83% (many diffs)
53 mouse 29871 Scmh1 sex comb on midleg homolog 1 NM_001159630.1 76.7% 78.6% (many diffs)
54 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_017320254.1 76.5% 78.7% (many diffs)
55 mouse 29871 Scmh1 sex comb on midleg homolog 1 XM_006503149.2 75.6% 77.8% (many diffs)
56 mouse 29871 Scmh1 sex comb on midleg homolog 1 XR_001784154.1 51% (many diffs)
57 mouse 29871 Scmh1 sex comb on midleg homolog 1 XR_001784153.1 49.9% (many diffs)
58 mouse 29871 Scmh1 sex comb on midleg homolog 1 XR_001784155.1 19% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1863
ORF length:
1797
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa attggaagca caggacccca ggaacaccac atccacctgt attgccacag
121tagttggact gacaggtgcc cgccttcgcc tgcgccttga tgggagcgac aacaaaaatg
181acttctggcg gctggttgac tcagctgaaa tccagcctat tgggaactgt gaaaagaatg
241ggggtatgct acagccacct cttggatttc ggctgaatgc gtcttcttgg cccatgttcc
301ttttgaagac gctaaatgga gcagagatgg ctcccatcag gattttccac aaggagccac
361catcgccttc ccacaacttc ttcaaaatgg gaatgaagct agaagctgtg gacaggaaga
421accctcattt catttgccca gccactattg gggaggttcg gggctcagag gtgcttgtca
481cttttgatgg gtggcgaggg gcctttgact actggtgccg cttcgactcc cgagacatct
541tccctgtggg ctggtgttcc ttgactggag acaacctgca gcctcctggc accaaagttg
601tgattccaaa gaatccctat cctgcctccg atgtgaatac tgagaagccc agcatccaca
661gcagcaccaa aactgtcttg gaacatcaac cagggcagag ggggcgtaaa ccaggaaaga
721agcggggccg gacacccaag accctaattt cccatcccat ctctgcccca tccaagacag
781ctgaaccttt gaaattccca aagaagagag gtcccaaacc tggcagcaag aggaaacctc
841ggactttgct gaacccacca cctgcctcac caacaaccag cactcctgaa ccggatacca
901gcactgtacc ccaggatgct gccaccatcc ccagctcagc catgcaggcc ccaacagttt
961gtatctactt gaacaagaat ggcagcacag gcccccactt agataagaag aaggtccagc
1021aactccctga ccattttgga ccagcccgtg cctctgtggt gttgcagcag gctgtccagg
1081cctgtatcga ctgtgcttat caccagaaaa ccgtcttcag cttcctcaag caaggccatg
1141gtggtgaggt tatctcagcc gtgtttgacc gggaacagca taccctcaac ctcccagcag
1201tcaacagcat cacctacgtc ctccgcttcc tggagaaact ctgccacaac cttcgtagtg
1261acaatctgtt tggcaaccag ccctttacac agactcactt gtcactcact gccatagagt
1321acagccacag ccacgacagg tacctaccag gtgaaacctt tgtcctgggg aatagtctgg
1381cccgctcctt ggaaccacac tcagactcaa tggactctgc ctcaaatccc accaaccttg
1441tcagcacctc ccaaaggcac cggcccttgc tttcatcctg tggcctccca ccaagcactg
1501cctcagctgt gcgcaggcta tgctccaggg gagtgttaaa aggatcaaat gaaagaaggg
1561atatggaatc attttggaaa ctaaatcgtt ccccagggtc ggaccgatac ctggagagcc
1621gcgatgcctc tcgactgagt ggccgggacc cctcctcatg gacagtcgag gatgtgatgc
1681agtttgtccg ggaagctgat cctcagcttg gaccccacgc tgacctgttt cgcaaacacg
1741agatcgatgg caaggccctg ctgctgctgc gcagtgacat gatgatgaag tacatgggcc
1801tgaagctggg gcctgcactc aagctctcct accacattga ccggctgaag cagggcaagt
1861tctgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1921tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1981tctggatta

Download FASTA (ORF) (Full)