Construct: ORF ccsbBroad304_03282

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006989.1_s304c1, BRDN0000407601
Derived from:
ccsbBroadEn_03282
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHF21A (51317)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03282
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51317 PHF21A PHD finger protein 21A NM_001101802.2 100% 100%
2 human 51317 PHF21A PHD finger protein 21A XM_017017891.1 100% 100%
3 human 51317 PHF21A PHD finger protein 21A NM_001352025.2 99.8% 99.8% 612_614delGCA
4 human 51317 PHF21A PHD finger protein 21A NM_001352026.2 99.8% 99.8% 612_614delGCA
5 human 51317 PHF21A PHD finger protein 21A NM_001352027.2 99.8% 99.8% 612_614delGCA
6 human 51317 PHF21A PHD finger protein 21A XM_005252965.4 99.8% 99.8% 612_614delGCA
7 human 51317 PHF21A PHD finger protein 21A XM_011520174.2 99.8% 99.8% 612_614delGCA
8 human 51317 PHF21A PHD finger protein 21A XM_024448574.1 99.8% 99.8% 612_614delGCA
9 human 51317 PHF21A PHD finger protein 21A XM_024448575.1 99.8% 99.8% 612_614delGCA
10 human 51317 PHF21A PHD finger protein 21A XM_024448576.1 99.8% 99.8% 612_614delGCA
11 human 51317 PHF21A PHD finger protein 21A XM_011520175.2 99.7% 99.7% 358_359insAGA;609_611delGCA
12 human 51317 PHF21A PHD finger protein 21A XM_017017892.1 99.7% 99.7% 358_359insAGA;609_611delGCA
13 human 51317 PHF21A PHD finger protein 21A XM_017017888.1 98.9% 98.9% 85_105del
14 human 51317 PHF21A PHD finger protein 21A XM_011520157.2 98.8% 98.8% 85_105del;633_635delGCA
15 human 51317 PHF21A PHD finger protein 21A XM_011520158.2 98.8% 98.8% 85_105del;633_635delGCA
16 human 51317 PHF21A PHD finger protein 21A XM_011520160.3 98.8% 98.8% 85_105del;633_635delGCA
17 human 51317 PHF21A PHD finger protein 21A XM_011520161.2 98.8% 98.8% 85_105del;633_635delGCA
18 human 51317 PHF21A PHD finger protein 21A XM_011520162.3 98.8% 98.8% 85_105del;633_635delGCA
19 human 51317 PHF21A PHD finger protein 21A XM_011520164.2 98.8% 98.8% 85_105del;633_635delGCA
20 human 51317 PHF21A PHD finger protein 21A XM_011520165.2 98.8% 98.8% 85_105del;633_635delGCA
21 human 51317 PHF21A PHD finger protein 21A XM_011520166.3 98.8% 98.8% 85_105del;633_635delGCA
22 human 51317 PHF21A PHD finger protein 21A XM_011520167.2 98.8% 98.8% 85_105del;633_635delGCA
23 human 51317 PHF21A PHD finger protein 21A XM_011520168.2 98.8% 98.8% 85_105del;633_635delGCA
24 human 51317 PHF21A PHD finger protein 21A XM_017017885.2 98.8% 98.8% 85_105del;633_635delGCA
25 human 51317 PHF21A PHD finger protein 21A XM_017017886.1 98.8% 98.8% 85_105del;633_635delGCA
26 human 51317 PHF21A PHD finger protein 21A XM_017017887.2 98.8% 98.8% 85_105del;633_635delGCA
27 human 51317 PHF21A PHD finger protein 21A XM_017017890.1 98.8% 98.8% 85_105del;379_380insAGA
28 human 51317 PHF21A PHD finger protein 21A XM_017017889.1 98.6% 98.6% 85_105del;379_380insAGA;630_632delGCA
29 human 51317 PHF21A PHD finger protein 21A XM_017017897.1 93% 92.5% (many diffs)
30 human 51317 PHF21A PHD finger protein 21A XM_017017898.2 93% 92.5% (many diffs)
31 human 51317 PHF21A PHD finger protein 21A XM_017017899.1 93% 92.5% (many diffs)
32 human 51317 PHF21A PHD finger protein 21A XM_017017900.1 93% 92.5% (many diffs)
33 human 51317 PHF21A PHD finger protein 21A NM_001352031.2 92.8% 91.8% (many diffs)
34 human 51317 PHF21A PHD finger protein 21A NM_001352032.2 92.8% 91.8% (many diffs)
35 human 51317 PHF21A PHD finger protein 21A XM_024448577.1 92.8% 91.8% (many diffs)
36 human 51317 PHF21A PHD finger protein 21A XM_024448578.1 92.8% 91.8% (many diffs)
37 human 51317 PHF21A PHD finger protein 21A NM_001352028.1 92.7% 91.6% (many diffs)
38 human 51317 PHF21A PHD finger protein 21A NM_001352029.1 92.7% 91.6% (many diffs)
39 human 51317 PHF21A PHD finger protein 21A NM_016621.4 92.7% 91.6% (many diffs)
40 human 51317 PHF21A PHD finger protein 21A XM_011520179.3 92.7% 91.6% (many diffs)
41 human 51317 PHF21A PHD finger protein 21A NM_001352030.2 92.6% 91.5% (many diffs)
42 human 51317 PHF21A PHD finger protein 21A XM_017017902.1 92.6% 91.5% (many diffs)
43 human 51317 PHF21A PHD finger protein 21A XM_017017895.1 91.9% 90.8% (many diffs)
44 human 51317 PHF21A PHD finger protein 21A XM_017017894.1 91.8% 90.7% (many diffs)
45 human 51317 PHF21A PHD finger protein 21A XM_017017896.1 91.6% 90.5% (many diffs)
46 human 51317 PHF21A PHD finger protein 21A XM_017017901.1 91.2% 91.2% 85_105del;633_635delGCA;1473_1474ins156
47 human 51317 PHF21A PHD finger protein 21A XM_017017893.1 90.7% 88.2% (many diffs)
48 human 51317 PHF21A PHD finger protein 21A XM_017017907.1 87.7% 87.6% 360_361ins249;362A>T
49 human 51317 PHF21A PHD finger protein 21A XM_017017905.1 86.8% 86.7% 85_105del;381_382ins249;383A>T
50 human 51317 PHF21A PHD finger protein 21A XM_017017906.2 84.5% 80.9% (many diffs)
51 human 51317 PHF21A PHD finger protein 21A XM_017017908.1 81.3% 81.3% 0_1ins381
52 human 51317 PHF21A PHD finger protein 21A XR_001747902.2 69.5% (many diffs)
53 human 51317 PHF21A PHD finger protein 21A XR_001747900.1 27.7% (many diffs)
54 human 51317 PHF21A PHD finger protein 21A NR_147890.2 27% (many diffs)
55 mouse 192285 Phf21a PHD finger protein 21A XM_006498975.3 91.7% 94.4% (many diffs)
56 mouse 192285 Phf21a PHD finger protein 21A NM_001109690.1 91.6% 94.3% (many diffs)
57 mouse 192285 Phf21a PHD finger protein 21A XM_006498967.3 91.6% 94.3% (many diffs)
58 mouse 192285 Phf21a PHD finger protein 21A XM_006498970.3 91.6% 94.3% (many diffs)
59 mouse 192285 Phf21a PHD finger protein 21A XM_006498971.3 91.6% 94.3% (many diffs)
60 mouse 192285 Phf21a PHD finger protein 21A XM_006498972.3 91.6% 94.3% (many diffs)
61 mouse 192285 Phf21a PHD finger protein 21A XM_017316527.1 91.6% 94.3% (many diffs)
62 mouse 192285 Phf21a PHD finger protein 21A XM_006498974.3 91.4% 94.1% (many diffs)
63 mouse 192285 Phf21a PHD finger protein 21A XM_017316529.1 91.4% 94.1% (many diffs)
64 mouse 192285 Phf21a PHD finger protein 21A XM_011239374.2 90.8% 93.5% (many diffs)
65 mouse 192285 Phf21a PHD finger protein 21A XM_006498959.3 90.7% 93.3% (many diffs)
66 mouse 192285 Phf21a PHD finger protein 21A XM_006498960.3 90.7% 93.3% (many diffs)
67 mouse 192285 Phf21a PHD finger protein 21A XM_006498964.3 90.7% 93.3% (many diffs)
68 mouse 192285 Phf21a PHD finger protein 21A XM_011239361.2 90.7% 93.3% (many diffs)
69 mouse 192285 Phf21a PHD finger protein 21A XM_011239362.2 90.7% 93.3% (many diffs)
70 mouse 192285 Phf21a PHD finger protein 21A XM_011239363.2 90.7% 93.3% (many diffs)
71 mouse 192285 Phf21a PHD finger protein 21A XM_011239364.2 90.7% 93.3% (many diffs)
72 mouse 192285 Phf21a PHD finger protein 21A XM_011239365.2 90.7% 93.3% (many diffs)
73 mouse 192285 Phf21a PHD finger protein 21A XM_011239366.2 90.7% 93.3% (many diffs)
74 mouse 192285 Phf21a PHD finger protein 21A XM_011239367.2 90.7% 93.3% (many diffs)
75 mouse 192285 Phf21a PHD finger protein 21A XM_011239368.2 90.7% 93.3% (many diffs)
76 mouse 192285 Phf21a PHD finger protein 21A XM_011239369.2 90.7% 93.3% (many diffs)
77 mouse 192285 Phf21a PHD finger protein 21A XM_011239370.2 90.7% 93.3% (many diffs)
78 mouse 192285 Phf21a PHD finger protein 21A XM_011239371.2 90.7% 93.3% (many diffs)
79 mouse 192285 Phf21a PHD finger protein 21A XM_011239372.2 90.7% 93.3% (many diffs)
80 mouse 192285 Phf21a PHD finger protein 21A XM_011239373.2 90.5% 93.2% (many diffs)
81 mouse 192285 Phf21a PHD finger protein 21A XM_017316543.1 84.9% 86.5% (many diffs)
82 mouse 192285 Phf21a PHD finger protein 21A NM_001346704.1 84.8% 86.4% (many diffs)
83 mouse 192285 Phf21a PHD finger protein 21A XM_017316535.1 84.8% 86.4% (many diffs)
84 mouse 192285 Phf21a PHD finger protein 21A XM_017316536.1 84.7% 86.2% (many diffs)
85 mouse 192285 Phf21a PHD finger protein 21A XM_011239376.2 84% 85.5% (many diffs)
86 mouse 192285 Phf21a PHD finger protein 21A XM_017316533.1 83.8% 85.4% (many diffs)
87 mouse 192285 Phf21a PHD finger protein 21A NM_001109691.1 81.8% 82.2% (many diffs)
88 mouse 192285 Phf21a PHD finger protein 21A XM_006498980.3 81.8% 82.2% (many diffs)
89 mouse 192285 Phf21a PHD finger protein 21A XM_017316548.1 81.8% 82.2% (many diffs)
90 mouse 192285 Phf21a PHD finger protein 21A XM_011239377.2 81% 81.4% (many diffs)
91 mouse 192285 Phf21a PHD finger protein 21A XM_011239378.2 80.9% 81.4% (many diffs)
92 mouse 192285 Phf21a PHD finger protein 21A NM_138755.2 74.9% 74.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2106
ORF length:
2040
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gttgcagact ctacaggagg ctcttaaagt ggaaattcag gttcaccaga
121aactggttgc tcaaatgaag caggatccac agaatgctga cttaaagaaa cagcttcatg
181aactccaagc caaaatcaca gctttgagtg agaaacagaa aagagtagtt gaacagctac
241ggaagaacct gatagtaaag caagaacaac cggacaagtt ccaaatacag ccattgccac
301aatctgaaaa caaactacaa acagcacagc agcaaccact acagcaacta caacaacagc
361agcagtacca ccaccaccac gcccagcagt cagctgcagc ctctcccaac ctgactgctt
421cacagaagac tgtaactaca gcttctatga ttaccacaaa gacactacct ctcgtcttga
481aagcagcaac tgcgaccatg cctgcctctg tggtgggcca gagacctacc attgctatgg
541tgaccgccat caacagtcag aaggctgtgc tcagcactga tgtgcagaac acaccagtca
601acctccagac gtctagtaag gtcactgggc ctggggcaga ggctgtccaa attgtggcaa
661aaaacacagt cactctggtt caggcaacac ctcctcagcc catcaaagta ccacagttta
721tcccccctcc tagactcact ccacgtccaa actttcttcc acaggttcga cccaagcctg
781tggcccagaa taacattcct attgccccag caccacctcc catgctcgca gctcctcagc
841ttatccagag gcccgtcatg ctgaccaagt tcacccccac aacccttccc acatcccaga
901attccatcca ccccgtccgt gtcgtcaatg ggcagactgc aaccatagcc aaaacgttcc
961ccatggccca gctcaccagc attgtgatag ctactccagg gaccagactc gctggacctc
1021aaactgtaca gcttagcaag ccaagtcttg aaaaacagac agttaaatct cacacagaaa
1081cagatgagaa acaaacagag agccgcacca tcaccccacc tgctgcaccc aaaccaaaac
1141gggaggagaa ccctcagaaa cttgccttca tggtgtctct agggttggta acacatgacc
1201atctagaaga aatccaaagc aagaggcaag agcgaaaaag aagaacaaca gcaaatccgg
1261tctacagtgg agcagtcttt gagccagagc gtaagaagag tgcagtgaca tacctaaaca
1321gcacaatgca ccctgggacc cggaagagag gtcgtcctcc aaaatacaat gcagtgctgg
1381ggtttggagc ccttacccca acatcccccc aatccagtca tcctgactcc cctgaaaatg
1441aaaagacaga gaccacattc actttccctg cacctgttca gcctgtgtcc ctgcccagcc
1501ccacctccac agacggtgat attcatgagg atttttgcag cgtttgcaga aaaagtggcc
1561agttactgat gtgcgacaca tgttcccgtg tatatcattt ggactgctta gacccccctc
1621tgaaaacaat tcccaagggc atgtggatct gtcccagatg tcaggaccag atgctgaaga
1681aggaagaagc aattccatgg cctggaactt tagcaattgt tcattcctat attgcctaca
1741aagcagcaaa agaagaagag aaacagaagt tacttaaatg gagttcagat ttaaaacaag
1801aacgagaaca actagagcaa aaggtgaaac agctcagcaa ttccataagt aaatgcatgg
1861aaatgaagaa caccatcctg gcccggcaga aggagatgca cagctccctg gagaaggtaa
1921aacagctgat tcgcctcatc cacggcatcg acctctccaa acctgtagac tctgaggcca
1981ctgtgggggc catctccaat ggcccggact gcaccccccc tgccaatgcc gccacctcca
2041cgccggcccc ttccccctcc tcccagagct gcacagcgaa ctgtaaccag ggggaagaga
2101ctaaataccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
2161gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
2221acctctggat ta

Download FASTA (ORF) (Full)