Construct: ORF ccsbBroad304_03526
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011632.1_s304c1, BRDN0000408037
- Derived from:
- ccsbBroadEn_03526
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARHGAP17 (55114)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_03526
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | NM_001006634.3 | 100% | 100% | |
| 2 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545873.3 | 96.4% | 96.4% | 723_818del |
| 3 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545874.3 | 94.9% | 94.8% | (many diffs) |
| 4 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545875.2 | 92.3% | 92.2% | (many diffs) |
| 5 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545876.2 | 91.9% | 91.8% | (many diffs) |
| 6 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_024450336.1 | 91.2% | 91.2% | 0_1ins231 |
| 7 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | NM_018054.6 | 91.1% | 91.1% | 1488_1489ins234 |
| 8 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545877.3 | 88% | 88% | 0_1ins231;492_587del |
| 9 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_011545878.3 | 87.9% | 87.9% | 723_818del;1584_1585ins234 |
| 10 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XM_017023390.1 | 83.3% | 83.3% | (many diffs) |
| 11 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XR_950810.2 | 73.5% | 1_110del;2625_2721del;2851_3594del | |
| 12 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XR_950809.2 | 71.6% | (many diffs) | |
| 13 | human | 55114 | ARHGAP17 | Rho GTPase activating prote... | XR_950811.2 | 67% | (many diffs) | |
| 14 | mouse | 70497 | Arhgap17 | Rho GTPase activating prote... | NM_144529.2 | 80.2% | 84.3% | (many diffs) |
| 15 | mouse | 70497 | Arhgap17 | Rho GTPase activating prote... | XM_006508201.3 | 76.2% | 80.3% | (many diffs) |
| 16 | mouse | 70497 | Arhgap17 | Rho GTPase activating prote... | NM_001122640.1 | 76.2% | 79.4% | (many diffs) |
| 17 | mouse | 70497 | Arhgap17 | Rho GTPase activating prote... | NM_001122641.1 | 72.3% | 76.8% | (many diffs) |
| 18 | mouse | 70497 | Arhgap17 | Rho GTPase activating prote... | NM_001122642.1 | 68.4% | 72% | (many diffs) |
| 19 | mouse | 70497 | Arhgap17 | Rho GTPase activating prote... | NM_001122643.1 | 68.4% | 72.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2709
- ORF length:
- 2643
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa gaagcagttc aaccgcatga agcagctggc taaccagacc gtgggcagag 121 ctgagaaaac agaagtcctt agtgaagatc tattacagat tgagagacgc ctggacacgg 181 tgcggtcaat atgccaccat tcccataagc gcttggtggc atgtttccag ggccagcatg 241 gcaccgatgc cgagaggaga cacaaaaaac tgcctctgac agctcttgct caaaatatgc 301 aagaagcatc gactcagctg gaagactctc tcctggggaa gatgctggag acgtgtggag 361 atgctgagaa tcagctggct ctcgagctct cccagcacga agtctttgtt gagaaggaga 421 tcgtggaccc tctgtacggc atagctgagg tggagattcc caacatccag aagcagagga 481 agcagcttgc aagattggtg ttagactggg attcagtcag agccaggtgg aaccaagctc 541 acaaatcctc aggaaccaac tttcaggggc ttccatcaaa aatagatact ctaaaggaag 601 agatggatga agctggaaat aaagtagaac agtgcaagga tcaacttgca gcagacatgt 661 acaactttat ggccaaagaa ggggagtatg gcaaattctt tgttacgtta ttagaagccc 721 aagcagatta ccatagaaaa gcattagcag tcttagaaaa gaccctcccc gaaatgcgag 781 cccatcaaga taagtgggcg gaaaaaccag cctttgggac tcccctagaa gaacacctga 841 agaggagcgg gcgcgagatt gcgctgccca ttgaagcctg tgtcatgctg cttctggaga 901 caggcatgaa ggaggagggc cttttccgaa ttggggctgg ggcctccaag ttaaagaagc 961 tgaaagctgc tttggactgt tctacttctc acctggatga gttctattca gacccccatg 1021 ctgtagcagg tgctttaaaa tcctatttac gggaattgcc tgaacctttg atgactttta 1081 atctgtatga agaatggaca caagttgcaa gtgtgcagga tcaagacaaa aaacttcaag 1141 acttgtggag aacatgtcag aagttgccac cacaaaattt tgttaacttt agatatttga 1201 tcaagttcct tgcaaagctt gctcagacca gcgatgtgaa taaaatgact cccagcaaca 1261 ttgcgattgt gttaggccct aacttgttat gggccagaaa tgaaggaaca cttgctgaaa 1321 tggcagcagc cacatccgtc catgtggttg cagtgattga acccatcatt cagcatgccg 1381 actggttctt ccctgaagag gtggaattta atgtatcaga agcatttgta cctctcacca 1441 ccccgagttc taatcactca ttccacactg gaaacgactc tgactcgggg accctggaga 1501 ggaagcggcc tgctagcatg gcggtgatgg aaggagactt ggtgaagaag gaaagctttg 1561 gtgtgaagct tatggacttc caggcccacc ggcggggtgg cactctaaat agaaagcaca 1621 tatcccccgc tttccagccg ccacttccgc ccacagatgg cagcaccgtg gtgcccgctg 1681 gcccagagcc ccctccccag agctctaggg ctgaaagcag ctctgggggt gggactgtcc 1741 cctcttccgc gggcatactg gagcaggggc cgagcccagg cgacggcagt cctcccaaac 1801 cgaaggaccc tgtatctgca gctgtgccag caccagggag aaacaacagt cagatagcat 1861 ctggccaaaa tcagccccag gcagctgctg gctcccacca gctctccatg ggccaacctc 1921 acaatgctgc agggcccagc ccgcatacac tgcgccgagc tgttaaaaaa cccgctccag 1981 cacccccgaa accgggcaac ccacctcctg gccaccccgg gggccagagt tcttcaggaa 2041 catctcagca tccacccagt ctgtcaccaa agccacccac ccgaagcccc tctcctccca 2101 cccagcacac gggccagcct ccaggccagc cctccgcccc ctcccagctc tcagcacccc 2161 ggaggtactc cagcagcttg tctccaatcc aagctcccaa tcacccaccg ccgcagcccc 2221 ctacgcaggc cacgccactg atgcacacca aacccaatag ccagggccct cccaacccca 2281 tggcattgcc cagtgagcat ggacttgagc agccatctca cacccctccc cagactccaa 2341 cgccccccag tactccgccc ctaggaaaac agaaccccag tctgccagct cctcagaccc 2401 tggcaggggg taaccctgaa actgcacagc cacatgctgg aaccttaccg agaccgagac 2461 cagtaccaaa gccaaggaac cggcccagcg tgcccccacc cccccaacct cctggtgtcc 2521 actcagctgg ggacagcagc ctcaccaaca cagcaccaac agcttccaag atagtaacag 2581 actccaattc cagggtttca gaaccgcatc gcagcatctt tcctgaaatg cactcagact 2641 cagccagcaa agacgtgcct ggccgcatcc tgctggatat agacaatgat accgagagca 2701 ctgccctgtg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 2761 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 2821 tcaacctctg gatta