Construct: ORF ccsbBroad304_03964

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013129.1_s304c1, BRDN0000409945
Derived from:
ccsbBroadEn_03964
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ILRUN (64771)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03964
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64771 ILRUN inflammation and lipid regu... NM_024294.4 100% 100%
2 human 64771 ILRUN inflammation and lipid regu... XM_005249298.3 96.7% 96.3% (many diffs)
3 human 64771 ILRUN inflammation and lipid regu... NM_022758.6 77.8% 77.8% 312_313ins198
4 human 64771 ILRUN inflammation and lipid regu... XR_926300.3 15.6% (many diffs)
5 mouse 224647 D17Wsu92e DNA segment, Chr 17, Wayne ... NM_001033279.3 92.1% 94.9% (many diffs)
6 mouse 224647 D17Wsu92e DNA segment, Chr 17, Wayne ... NM_001044719.2 66.7% 72.1% (many diffs)
7 mouse 224647 D17Wsu92e DNA segment, Chr 17, Wayne ... NM_001271511.1 65.3% 58.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
960
ORF length:
894
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gggcatggac gtagacctgg acccggagct gatgcagaag ttcagctgcc
121tgggcaccac cgacaaggac gtgctcatct ccgagttcca gaggctgctc ggcttccagc
181tcaatcctgc cggttgcgcc ttcttcctgg acatgaccaa ctggaaccta caagcagcaa
241ttggcgccta ttatgacttt gagagcccaa acatcagtgt gccctctatg tcctttgttg
301aagatgtcac cataggagaa ggggagtcaa tacctccgga tactcagttt gtaaaaacat
361ggcggatcca gaattctggg gcagaggcct ggcctccagg ggtttgtctt aaatatgtcg
421ggggagacca atttggacat gtgaacatgg tgatggtgag atcgctagag ccccaagaga
481ttgcagatgt cagcgtccag atgtgcagcc ccagcagagc aggaatgtat cagggacagt
541ggcggatgtg cactgctaca ggactctact atggagatgt catctgggtg attctcagtg
601tggaggtggg tggactttta ggagtaacgc agcagctgtc atcttttgaa acggagttca
661acacacagcc gcatcgtaag gtagaaggaa acttcaaccc ttttgcctct ccccaaaaga
721accgacaatc agatgaaaac aacttaaaag accctggggg ctccgagttc gactcgatca
781gcaaaaacac atgggctcct gctcctgaca catgggctcc tgctcctgac caaactgagc
841aagaccagaa tagactgtca cagaactctg taaatctgtc tcccagcagt cacgcaaaca
901acttatcagt agtgacttac agtaaggggc tccatgggcc ttaccccttc ggccagtctt
961acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1021attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1081ggatta

Download FASTA (ORF) (Full)