Construct: ORF ccsbBroad304_04235

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001180.1_s304c1, BRDN0000406874
Derived from:
ccsbBroadEn_04235
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TDRD3 (81550)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04235
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81550 TDRD3 tudor domain containing 3 NM_001146071.1 100% 100%
2 human 81550 TDRD3 tudor domain containing 3 NM_030794.2 100% 100%
3 human 81550 TDRD3 tudor domain containing 3 XM_024449418.1 100% 100%
4 human 81550 TDRD3 tudor domain containing 3 XM_024449419.1 100% 100%
5 human 81550 TDRD3 tudor domain containing 3 XM_024449416.1 91% 85.9% 1837_1988del;2106_2145del
6 human 81550 TDRD3 tudor domain containing 3 XM_005266560.2 90.9% 85.8% 1837_1988del;2106_2148del
7 human 81550 TDRD3 tudor domain containing 3 XM_024449417.1 90.9% 85.8% 1837_1988del;2106_2148del
8 human 81550 TDRD3 tudor domain containing 3 NM_001146070.2 87.5% 87.5% 1_279del
9 human 81550 TDRD3 tudor domain containing 3 XM_017020777.1 87.5% 87.5% 1_279del
10 human 81550 TDRD3 tudor domain containing 3 XR_002957476.1 81.9% 1_68del;1905_1991del;2109_2384del
11 human 81550 TDRD3 tudor domain containing 3 XR_002957475.1 81.8% 1_68del;1905_1991del;2109_2387del
12 human 81550 TDRD3 tudor domain containing 3 XM_005266556.4 80.4% 76% 1_279del;2116_2267del;2385_2427del
13 mouse 219249 Tdrd3 tudor domain containing 3 XM_006518910.3 85% 84.1% (many diffs)
14 mouse 219249 Tdrd3 tudor domain containing 3 XM_006518911.3 85% 84.1% (many diffs)
15 mouse 219249 Tdrd3 tudor domain containing 3 XM_006518912.3 85% 84.1% (many diffs)
16 mouse 219249 Tdrd3 tudor domain containing 3 XM_006518909.2 76.7% 75.9% (many diffs)
17 mouse 219249 Tdrd3 tudor domain containing 3 NM_172605.3 74.4% 73.6% (many diffs)
18 mouse 219249 Tdrd3 tudor domain containing 3 NM_001253755.1 70.7% 69% (many diffs)
19 mouse 219249 Tdrd3 tudor domain containing 3 XM_011245039.1 70.7% 68.6% (many diffs)
20 mouse 219249 Tdrd3 tudor domain containing 3 XR_383170.2 59.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2019
ORF length:
1953
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gcgattacag atgactgatg gtcatataag ttgcacagca gtagaattta
121gttatatgtc aaaaataagc ctgaacacac cacctggaac taaagttaag ctctcaggca
181ttgttgacat aaaaaatgga ttcctgctct tgaatgactc taacaccaca gttcttggtg
241gtgaagtgga acaccttatt gagaaatggg agttacagag aagcttatca aaacacaata
301gaagcaatat tggaactgaa ggtggaccac cgccttttgt gccttttgga cagaagtgtg
361tatctcatgt ccaagtggat agcagagaac ttgatcgaag aaaaacattg caagttacaa
421tgcctgtcaa acctacaaat gataatgatg aatttgaaaa gcaaaggacg gctgctattg
481ctgaagttgc aaagagcaag gaaaccaaga catttggagg aggtggtggt ggtgctagaa
541gtaatctcaa tatgaatgct gctggtaacc gaaataggga agttttacag aaagaaaagt
601caaccaaatc agagggaaaa catgaaggtg tctatagaga actggttgat gagaaagctc
661tgaagcacat aacggaaatg ggcttcagta aggaagcatc gaggcaagct cttatggata
721atggcaacaa cttagaagca gcactgaacg tacttcttac aagcaataaa cagaaacctg
781ttatgggtcc tcctctgaga ggtagaggaa aaggcagggg gcgaataaga tctgaagatg
841aagaggacct gggaaatgca aggccatcag caccaagcac attatttgat ttcttggaat
901ctaaaatggg aactttgaat gtggaagaac ctaaatcaca gccacagcag cttcatcagg
961gacaatacag atcatcaaat actgagcaaa atggagtaaa agataataat catctgagac
1021atcctcctcg aaatgatacc aggcagccaa gaaatgaaaa accgcctcgt tttcaaagag
1081actcccaaaa ttcaaagtca gttttagaag gcagtggatt acctagaaat agaggttctg
1141aaagaccaag tacttcttca gtatctgaag tatgggctga agacagaatc aaatgtgata
1201gaccgtattc tagatatgac agaactaaag atacttcata tcctttaggt tctcagcata
1261gtgatggtgc ttttaaaaaa agagataact ctatgcaaag cagatcagga aaaggtccct
1321cctttgcaga ggcaaaagaa aatccacttc ctcaaggatc tgtagattat aataatcaaa
1381aacgtggaaa aagagaaagc caaacatcta ttcctgatta tttttatgac aggaaatcac
1441aaacaataaa taatgaagct ttcagtggta taaaaattga aaaacatttt aatgtaaata
1501ctgattatca gaatccagtt cgaagtaata gtttcattgg tgttccaaat ggagaagtag
1561aaatgccact gaaaggaaga cgaataggac ctattaagcc agcaggacct gtcacagctg
1621taccctgtga tgataaaata ttttacaata gtgggcccaa acgaagatct gggccaatta
1681agccagaaaa aatactagaa tcatctattc ctatggagta tgcaaaaatg tggaaacctg
1741gagatgaatg ttttgcactt tattgggaag acaacaagtt ttaccgggca gaagttgaag
1801ccctccattc ttcgggtatg acagcagttg ttaaattcat tgactacgga aactatgaag
1861aggtgctact gagcaatatc aagcccattc aaacagaggc atgggaggaa gaaggcacct
1921acgatcaaac tctggagttc cgtaggggag gtgatggcca gccaagacga tccactcggc
1981caacccaaca gttttaccaa ccaccccggg ctcggaacta cccaactttc ttgtacaaag
2041tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2101gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

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