Transcript: Human XM_017016641.1

PREDICTED: Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant X24, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC7 (79741)
Length:
4255
CDS:
300..3896

Additional Resources:

NCBI RefSeq record:
XM_017016641.1
NBCI Gene record:
CCDC7 (79741)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017016641.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424953 GGACGTAGCATACCAGATAAA pLKO_005 2298 CDS 100% 13.200 18.480 N CCDC7 n/a
2 TRCN0000130260 CCGTGAAAGTCATGTTGTCTA pLKO.1 388 CDS 100% 4.950 6.930 N CCDC7 n/a
3 TRCN0000417657 ATGCAATTAAGACGCAGTTAA pLKO_005 2968 CDS 100% 13.200 10.560 N CCDC7 n/a
4 TRCN0000442313 GTTTCCCTGGGCCTGATATAG pLKO_005 2827 CDS 100% 13.200 10.560 N CCDC7 n/a
5 TRCN0000130461 GAAGAACTGAAGAATCGCCTT pLKO.1 348 CDS 100% 2.160 1.728 N CCDC7 n/a
6 TRCN0000425544 GCTTTGGGAAGACGCTTATTA pLKO_005 2778 CDS 100% 15.000 10.500 N CCDC7 n/a
7 TRCN0000425836 GCGAATCTCAAACGAAGAAAC pLKO_005 2596 CDS 100% 10.800 7.560 N CCDC7 n/a
8 TRCN0000130087 CAAAGCGGAAGACTGATTGAA pLKO.1 1167 CDS 100% 5.625 3.938 N CCDC7 n/a
9 TRCN0000168662 GCTGGAAATACAGTGGATCAA pLKO.1 4023 3UTR 100% 4.950 3.465 N CCDC7 n/a
10 TRCN0000129043 GACAACAATGCAAGTGGGTAA pLKO.1 1013 CDS 100% 4.050 2.835 N CCDC7 n/a
11 TRCN0000128247 GCTCATTCAATGACTAATCGA pLKO.1 540 CDS 100% 3.000 2.100 N CCDC7 n/a
12 TRCN0000167455 GCAACATGACAAATTCAGAAA pLKO.1 3924 3UTR 100% 4.950 2.970 N CCDC7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017016641.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05247 pDONR223 100% 21.2% 20.9% None (many diffs) n/a
2 ccsbBroad304_05247 pLX_304 0% 21.2% 20.9% V5 (many diffs) n/a
3 TRCN0000474906 ACCAACGAGAACCAAGGACGGAGG pLX_317 31.4% 21.2% 20.9% V5 (many diffs) n/a
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