Transcript: Human XM_011519679.1

PREDICTED: Homo sapiens coiled-coil domain containing 7 (CCDC7), transcript variant X23, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC7 (79741)
Length:
4295
CDS:
310..3936

Additional Resources:

NCBI RefSeq record:
XM_011519679.1
NBCI Gene record:
CCDC7 (79741)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011519679.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424953 GGACGTAGCATACCAGATAAA pLKO_005 2338 CDS 100% 13.200 18.480 N CCDC7 n/a
2 TRCN0000128807 CCATTCCATCGAGTAAGACAA pLKO.1 512 CDS 100% 4.950 6.930 N CCDC7 n/a
3 TRCN0000130260 CCGTGAAAGTCATGTTGTCTA pLKO.1 959 CDS 100% 4.950 6.930 N CCDC7 n/a
4 TRCN0000128246 GCAGAAATAGTAAGGCTTGTA pLKO.1 889 CDS 100% 4.950 6.930 N CCDC7 n/a
5 TRCN0000417657 ATGCAATTAAGACGCAGTTAA pLKO_005 3008 CDS 100% 13.200 10.560 N CCDC7 n/a
6 TRCN0000130295 CGGCAAATGTTCCAGCATTAA pLKO.1 350 CDS 100% 13.200 10.560 N CCDC7 n/a
7 TRCN0000442313 GTTTCCCTGGGCCTGATATAG pLKO_005 2867 CDS 100% 13.200 10.560 N CCDC7 n/a
8 TRCN0000130461 GAAGAACTGAAGAATCGCCTT pLKO.1 919 CDS 100% 2.160 1.728 N CCDC7 n/a
9 TRCN0000425544 GCTTTGGGAAGACGCTTATTA pLKO_005 2818 CDS 100% 15.000 10.500 N CCDC7 n/a
10 TRCN0000425836 GCGAATCTCAAACGAAGAAAC pLKO_005 2636 CDS 100% 10.800 7.560 N CCDC7 n/a
11 TRCN0000129232 CTATGGACATTGCGATCAGAA pLKO.1 612 CDS 100% 4.950 3.465 N CCDC7 n/a
12 TRCN0000168662 GCTGGAAATACAGTGGATCAA pLKO.1 4063 3UTR 100% 4.950 3.465 N CCDC7 n/a
13 TRCN0000128247 GCTCATTCAATGACTAATCGA pLKO.1 1111 CDS 100% 3.000 2.100 N CCDC7 n/a
14 TRCN0000129676 CAGAAGATGAAATGATCGGAA pLKO.1 545 CDS 100% 2.640 1.848 N CCDC7 n/a
15 TRCN0000130183 CAGGTCAATCAGATGGAAGAA pLKO.1 799 CDS 100% 4.950 2.970 N CCDC7 n/a
16 TRCN0000167455 GCAACATGACAAATTCAGAAA pLKO.1 3964 3UTR 100% 4.950 2.970 N CCDC7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011519679.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05247 pDONR223 100% 38.6% 34.1% None (many diffs) n/a
2 ccsbBroad304_05247 pLX_304 0% 38.6% 34.1% V5 (many diffs) n/a
3 TRCN0000474906 ACCAACGAGAACCAAGGACGGAGG pLX_317 31.4% 38.6% 34.1% V5 (many diffs) n/a
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